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| ===gp_information files (GPI)===
| | Moved to https://github.com/geneontology/go-annotation/tree/master/specs |
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| <pre>
| | [[Category:Software]] |
| N.B. The first line in the gp_information file should be;
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| !gpi-version: 1.2
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| </pre>
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| ====Proposed format (March 2014)====
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| {| cellspacing="2" border="1"
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| |-
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| ! column
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| ! name
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| ! required?
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| ! cardinality
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| ! GAF column
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| ! Example for UniProt
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| ! Example for IntAct
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| ! Example for MGI Gene
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| ! MGI protein
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| ! MGI RNA
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| |-
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| | 01 || DB || required || 1 || 1 || UniProtKB || IntAct || MGI || PR ||ENSEMBL
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| |-
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| | 02 || DB_Object_ID || required || 1 || 2/17 || Q4VCS5-1 || EBI-9008420 || MGI:96175 || Q9Z172-1 || ENSMUST00000127454
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| |-
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| | 03 || DB_Object_Symbol || required || 1 || 3 || AMOT || HBA1:HBB || Hoxa3 || mSumo3/iso:m1 ||ENSMUST00000127454
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| |-
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| | 04 || DB_Object_Name || optional || 0 or 1 || 10 || Angiomotin || Hemoglobin HbA complex || homeobox A3 || small ubiquitin-related modifier 3 isoform m1 (mouse) ||
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| | 05 || DB_Object_Synonym(s) || optional || 0 or greater || 11 || AMOT_HUMAN|KIAA1071|AMOT || HBA-HBB complex|HBA1-HBB complex|HBA1-HBB heterotetramer || Hox-1.5|Mo-10 || ||
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| | 06 || DB_Object_Type || required || 1 || 12 || protein || complex || gene || protein || transcript
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| |-
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| | 07 || Taxon || required || 1 || 13 || taxson:9606 || taxon:9606 || taxon:10090 || taxon:10090 || taxon:10090
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| |-
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| | 08 || Parent_Object_ID || optional || 0 or 1 || || UniProtKB:Q4VCS5 || || || MGI:MGI:1336201 || MGI:MGI:1098592
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| |-
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| | 09 || DB_Xref(s) || optional || 0 or greater || || UniProtKB:P38433 || PR:000025934 || UniProtKB:P02831 || UniProtKB:Q9Z172-1 ||
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| | 010 || Gene_Product_Properties || optional || 0 or greater || || See Note 4 below || || || ||
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| |-
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| |}
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| '''Notes'''
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| 1. Where it is stated that a column can have one or greater values,
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| e.g. 'with', DB_Object_Synonym(s), DB_Xref(s), the values should be given as a pipe-separated list.
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| 2. The DB_Xrefs column will be useful for mapping of MOD-specific identifiers/symbols/synonyms to UniProt accessions to assist MOD curators moving to Protein2GO in searching for familiar IDs/gene names. In the case of IntAct complexe IDs, it will be useful to include PRO IDs as an xref to enable a look-up function in Protein2GO. In the case where the value in column #2 represents a MOD gene identifier, the Xref should correspond to the UniProtKB identifier for the GCRP.
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| 3. Identifiers in the Parent_Object_ID column must have a prefix to avoid confusion in cases where an ID from a different database to the one specified in the header is included
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| 4. The Gene Product Properties column can be filled with a pipe separated list of "property_name = property_value". There will be a fixed vocabulary for the property names and this list can be extended when necessary.
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| Supported properties will include: 'GO annotation complete', "Phenotype annotation complete' (the value for these two properties would be a date), 'Target set' (e.g. Reference Genome, Kidney etc.), 'Database subset' (e.g. Swiss-Prot, TrEMBL), go_annotation_summary (textual summary of annotations for an entity)
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| [[Category:Specification]]
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| [[Category:GPAD]] | |