Protein Complexes: who, what, where: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 71: Line 71:


== Other Groups Representing Complexes but not at this Meeting ==  
== Other Groups Representing Complexes but not at this Meeting ==  


{|border="1" cellpadding="5"
{|border="1" cellpadding="5"
Line 83: Line 82:
| [http://mips.helmholtz-muenchen.de/genre/proj/corum/]
| [http://mips.helmholtz-muenchen.de/genre/proj/corum/]
|-
|-
|}


== Related Materials ==
== Related Materials ==
* Discussion slides from GO Annotation Camp Discussion
* Discussion slides from GO Annotation Camp Discussion
[[File:WG-Protein-complexes-Pascale-Bernd.pdf]]
[[File:WG-Protein-complexes-Pascale-Bernd.pdf]]
* Link to GO working group discussion on Annotation of Complexes
[[2010_GO_camp_Annotation of complexes issues| Annotation of complexes issues]]

Revision as of 15:22, 6 July 2010

The Issue

  • Many groups now create/represent/annotate protein:protein complexes as a component of representing biological knowledge
  • Protein complexes exist in several resources resulting in a situation where the same 'thing' or 'entity' is represented in different places with different IDs and different names.
  • This meeting brings together several of the groups representing/creating protein complex entities with the goal of
  1. Decide which groups creates and provides ID namespace for which protein complex entities
  2. Decide the relation between the protein complex entities
  3. Decide on the exchange of information about protein complexes between groups.

The First Meeting

  • Date: July 11, 2010
  • Time: 11 am - 2 pm
  • Place: Boston Back Bay Hilton. 40 Dalton St. Boston MA 02115
  • Phone Number1-617-867-6158
  • Judy's Number1-207-460-7918

The Participants

Person Resource Institution
Judy Blake GOC and MGI Jax
Sandra Orchard IntACT EBI
Suzanna Lewis GOC LBNL
Peter D'Eustachio Reactome NYU
Alan Ruttenberg Semantic Web Science Commons
Michael Ashburner GOC U Cambridge
Rolf Apweiler UniProtKB EBI
Cathy Wu PRO Univ Del
Michelle Giglio Univ Maryland
Pascale Gaudet GOC and Dictybase Northwestern

Other Groups Representing Complexes but not at this Meeting

Resource Contract URL
CORUM" Comprehensive Resource of Mammalian Protein Complexes MIPS [1]

Related Materials

  • Discussion slides from GO Annotation Camp Discussion

File:WG-Protein-complexes-Pascale-Bernd.pdf

  • Link to GO working group discussion on Annotation of Complexes

Annotation of complexes issues