Difference between revisions of "Publications, Talks, Posters 2015"

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(2015 GO-centric Talks)
(2015 GO-centric Workshops)
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| Various GOC members || Workshop on Annotation || 2015-09-01 || [http://wiki.geneontology.org/index.php/2015_Washington_DC_GOC_Symposium_Agenda First GO Symposium Day], [http://wiki.geneontology.org/index.php/2015_Washington_DC_GOC_Meeting_Agenda GOC Annual Meeting, George Washington University, Washington, DC] || Open to the general public. Attendees included researchers, faculty, and students from local institutions as well as NIH senior personnel.
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| Paul Thomas || [http://wiki.geneontology.org/images/e/e1/GO_enrichment_Aug_2015.pdf Enrichment Analysis using the GO] || 2015-09-01 || [http://wiki.geneontology.org/index.php/2015_Washington_DC_GOC_Symposium_Agenda First GO Symposium Day], [http://wiki.geneontology.org/index.php/2015_Washington_DC_GOC_Meeting_Agenda GOC Annual Meeting, George Washington University, Washington, DC] || Open to the general public. Attendees included researchers, faculty, and students from local institutions as well as NIH senior personnel.
 
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| Monica Munoz-Torres || [http://www.slideshare.net/MonicaMunozTorres/consorcio-ontologa-de-genes-herramientas-para-anotacin-funcional Gene Ontology Consortium: tools for functional annotation (Original title: Consorcio Ontología de Genes: herramientas para anotación funcional)] || 2015-09-22 || [http://bios.co/ Centro de Bioinformática y Biología Computacional (BIOS), Manizales, Colombia] || Science faculty, undergraduate, and graduate students from local institutions.
 
| Monica Munoz-Torres || [http://www.slideshare.net/MonicaMunozTorres/consorcio-ontologa-de-genes-herramientas-para-anotacin-funcional Gene Ontology Consortium: tools for functional annotation (Original title: Consorcio Ontología de Genes: herramientas para anotación funcional)] || 2015-09-22 || [http://bios.co/ Centro de Bioinformática y Biología Computacional (BIOS), Manizales, Colombia] || Science faculty, undergraduate, and graduate students from local institutions.

Revision as of 21:49, 16 November 2015


List of papers published by GOC in 2015

Please list all article publications below in chronological order; the most recent publication should appear first.

Acknowledge funding by GOC NHGRI grant

  • Tanya Z. Berardini, Leonore Reiser, Donghui Li, Yarik Mezheritsky, Robert Muller, Emily Strait and Eva Huala.The Arabidopsis Information Resource: Making and mining the “gold standard” annotated reference plant genome. Genesis. Published online Aug 4 2015. (doi: 10.1002/dvg.22877)
  • Patel S, Roncaglia P, Lovering RC. Using Gene Ontology to describe the role of the neurexin-neuroligin-SHANK complex in human, mouse and rat and its relevance to autism. BMC Bioinformatics (in press).
  • Drabkin HJ, Christie KR, Dolan ME, Hill DP, Ni L, Sitnikov D, Blake JA. Application of comparative biology in GO functional annotation: the mouse model. Mamm Genome. 2015 Jul 4. [Epub ahead of print] PubMed PMID: 26141960.
  • Gene Ontology Consortium. Gene Ontology Consortium: going forward. Nucleic Acids Res. 2015 Jan;43(Database issue):D1049-56. doi: 10.1093/nar/gku1179. Epub 2014 Nov 26. PubMed PMID: 25428369; PubMed Central PMCID: PMC4383973.
  • Huntley RP, Sawford T, Mutowo-Meullenet P, Shypitsyna A, Bonilla C, Martin MJ, O'Donovan C. The GOA database: gene Ontology annotation updates for 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1057-63. doi: 10.1093/nar/gku1113. Epub 2014 Nov 6. PubMed PMID: 25378336; PubMed Central PMCID: PMC4383930.

Substantial GO involvement reported by broader GOC community

Meldal BH, Forner-Martinez O, Costanzo MC, Dana J, Demeter J, Dumousseau M, Dwight SS, Gaulton A, Licata L, Melidoni AN, Ricard-Blum S, Roechert B, Skyzypek MS, Tiwari M, Velankar S, Wong ED, Hermjakob H, Orchard S. The complex portal - an encyclopaedia of macromolecular complexes. Nucleic Acids Research 2015, 43(Database issue):D479-84. PMID:25313161 PMCID:PMC4384031

2015 GO-centric Talks

Presenter Talk Title Date Venue Audience
Donna Slonim Functional Context Matters: Building and Applying a New Dictionary for Human Development 2015-09-01 First GO Symposium Day, GOC Annual Meeting, George Washington University, Washington, DC Open to the general public. Attendees included researchers, faculty, and students from local institutions as well as NIH senior personnel.
Trey Ideker GO as a central reference for automated assembly of multi-scale models of cell biology 2015-09-01 First GO Symposium Day, GOC Annual Meeting, George Washington University, Washington, DC Open to the general public. Attendees included researchers, faculty, and students from local institutions as well as NIH senior personnel.
Monica Munoz-Torres Genome Cartography: tools for precision and depth in the annotation process. (Original title: Cartografía de Genomas: herramientas para anotación con precisión y profundidad) 2015-09-17 Congreso Colombiano Biología Computacional y Bioinformática, Medellín, Colombia Conference attendees.
Monica Munoz-Torres Collaborative Genome Curation: precision and depth in the annotation process 2015-11-13 Dept. of Entomology & Plant Pathology, University of Tennessee, Knoxville Attendees to Departmental Seminar.
Example Example Example Example Example

2015 GO-centric Posters

Presenter Poster Title Date Venue Audience
Paola Roncaglia and collaborators on vesicle project Refining Gene Ontology to Include Terms and Relationships Relevant to exRNA Communications [1] Apr 2015 ERCC/ISEV meeting, Bethesda, MD, USA Extracellular RNA and vesicle researchers
David Hill, Peter D' Eustachio, Nikolai Renedo, Judith Blake Linking GO Pathways to the Bigger Picture July 2015 ISMB/ECCB Dublin Ireland Computational Biologists
Karen Christie and Judith Blake Comprehensive Gene Ontology annotation of ciliary genes in the laboratory mouse July 2015 FASEB Biology of Cilia & Flagella - Snowmass, CO Cilia researchers
Example Example Example Example Example

2015 GO-centric Workshops

Presenter Workshop Title Date Venue Audience
Various GOC members Workshop on Annotation 2015-09-01 First GO Symposium Day, GOC Annual Meeting, George Washington University, Washington, DC Open to the general public. Attendees included researchers, faculty, and students from local institutions as well as NIH senior personnel.
Paul Thomas Enrichment Analysis using the GO 2015-09-01 First GO Symposium Day, GOC Annual Meeting, George Washington University, Washington, DC Open to the general public. Attendees included researchers, faculty, and students from local institutions as well as NIH senior personnel.
Monica Munoz-Torres Gene Ontology Consortium: tools for functional annotation (Original title: Consorcio Ontología de Genes: herramientas para anotación funcional) 2015-09-22 Centro de Bioinformática y Biología Computacional (BIOS), Manizales, Colombia Science faculty, undergraduate, and graduate students from local institutions.
Example Example Example Example Example

2015 GO Tutoring and Mentoring Activities

Paola Roncaglia at the EBI is external advisor of a PhD student in a program on "Foundations and Ethics of Life Sciences" (dissertation completed Oct 2015).