Publications, Talks, Posters 2015

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List of Papers published by GOC in 2015 (Chronologically, most recent first)

Acknowledge funding by GOC NHGRI grant

  • Tanya Z. Berardini, Leonore Reiser, Donghui Li, Yarik Mezheritsky, Robert Muller, Emily Strait and Eva Huala.The Arabidopsis Information Resource: Making and mining the “gold standard” annotated reference plant genome. Genesis. Published online Aug 4 2015. (doi: 10.1002/dvg.22877)
  • Patel S, Roncaglia P, Lovering RC. Using Gene Ontology to describe the role of the neurexin-neuroligin-SHANK complex in human, mouse and rat and its relevance to autism. BMC Bioinformatics (in press).
  • Drabkin HJ, Christie KR, Dolan ME, Hill DP, Ni L, Sitnikov D, Blake JA. Application of comparative biology in GO functional annotation: the mouse model. Mamm Genome. 2015 Jul 4. [Epub ahead of print] PubMed PMID: 26141960.
  • Gene Ontology Consortium. Gene Ontology Consortium: going forward. Nucleic Acids Res. 2015 Jan;43(Database issue):D1049-56. doi: 10.1093/nar/gku1179. Epub 2014 Nov 26. PubMed PMID: 25428369; PubMed Central PMCID: PMC4383973.
  • Huntley RP, Sawford T, Mutowo-Meullenet P, Shypitsyna A, Bonilla C, Martin MJ, O'Donovan C. The GOA database: gene Ontology annotation updates for 2015. Nucleic Acids Res. 2015 Jan;43(Database issue):D1057-63. doi: 10.1093/nar/gku1113. Epub 2014 Nov 6. PubMed PMID: 25378336; PubMed Central PMCID: PMC4383930.

Substantial GO involvement reported by broader GOC community

Meldal BH, Forner-Martinez O, Costanzo MC, Dana J, Demeter J, Dumousseau M, Dwight SS, Gaulton A, Licata L, Melidoni AN, Ricard-Blum S, Roechert B, Skyzypek MS, Tiwari M, Velankar S, Wong ED, Hermjakob H, Orchard S. The complex portal - an encyclopaedia of macromolecular complexes. Nucleic Acids Research 2015, 43(Database issue):D479-84. PMID:25313161 PMCID:PMC4384031

2015 GO-centric Talks

Presenter Talk Title Date Venue Audience
Monica Munoz-Torres Genome Cartography: tools for precision and depth in the annotation process. (Original title: Cartografía de Genomas: herramientas para anotación con precisión y profundidad) 2015-09-17 Congreso Colombiano Biología Computacional y Bioinformática, Medellín, Colombia Conference attendees.
Monica Munoz-Torres Collaborative Genome Curation: precision and depth in the annotation process 2015-11-13 Dept. of Entomology & Plant Pathology, University of Tennessee, Knoxville Attendees to Departmental Seminar.
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2015 GO-centric Posters

Presenter Poster Title Date Venue Audience
Paola Roncaglia and collaborators on vesicle project Refining Gene Ontology to Include Terms and Relationships Relevant to exRNA Communications [1] Apr 2015 ERCC/ISEV meeting, Bethesda, MD, USA Extracellular RNA and vesicle researchers
David Hill, Peter D' Eustachio, Nikolai Renedo, Judith Blake Linking GO Pathways to the Bigger Picture July 2015 ISMB/ECCB Dublin Ireland Computational Biologists
Karen Christie and Judith Blake Comprehensive Gene Ontology annotation of ciliary genes in the laboratory mouse July 2015 FASEB Biology of Cilia & Flagella - Snowmass, CO Cilia researchers
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2015 GO-centric Workshops

2015 GO Tutoring and Mentoring Activities

Paola Roncaglia at the EBI is external advisor of a PhD student in a program on "Foundations and Ethics of Life Sciences" (dissertation completed Oct 2015).