RefG Princeton April 12-13 2010: Difference between revisions
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* References, Figure Legends, Tables: as they fall out from the above. | * References, Figure Legends, Tables: as they fall out from the above. | ||
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=Other discussion items | =Other discussion items= | ||
* (Pascale): Should we remove GO:0005515 (protein binding) form the list of terms we see in PAINT? | * (Pascale): Should we remove GO:0005515 (protein binding) form the list of terms we see in PAINT? | ||
* (Mike): Is the PANTHER to P-POD OrthMCL mapping currently working? | * (Mike): Is the PANTHER to P-POD OrthMCL mapping currently working? | ||
* (Mike): Should we fix the dates in the new GAF files to reflect when the annotations were actually made? | * (Mike): Should we fix the dates in the new GAF files to reflect when the annotations were actually made? | ||
* (Mike): Could we re-generate the statistics from the GAF files using a script (rather than manually)? | * (Mike): Could we re-generate the statistics from the GAF files using a script (rather than manually)? | ||
* (Kara): Can we leverage the annotation reporter to generate the monthly lists in an easier way? |
Revision as of 16:08, 9 April 2010
Review 12 families
http://wiki.geneontology.org/index.php/GAFs_for_trees-based_annotations
- ACTION ITEM: We should all look at those 12 families before Monday!
Agenda/room availability
Monday 4/12:
Rm 280 10am-1pm.
Rm 253 1pm-4pm.
Tuesday 4/13:
Rm 253 10am-11am
Rm 280 11am-1pm
Rm 253 1pm-4pm
Discuss propagation rules
- also discuss what we will present at GO annotation camp
Annotation tracker
Paper
- Title: ???
- Authors: as on this mailing list, and possibly adding CJM, Seth, and Sven if we add a section on the DB and the other GO-top PIs
- Affiliations: obviously
- Abstract: Paul?
- Author Summary: I'll take a crack at this
- Introduction: Pascale&Paul
- Results: as below, with possible addition of DB section and web interface, although this could be a different paper. Ed and I can write #1, Paul&Mike for #2?
- Discussion: #3 (Mike & Kara)
- Materials and Methods: cut and dry, write at the end
- Acknowledgments: all the curators at the MODs, the grant...
- References, Figure Legends, Tables: as they fall out from the above.
Other discussion items
- (Pascale): Should we remove GO:0005515 (protein binding) form the list of terms we see in PAINT?
- (Mike): Is the PANTHER to P-POD OrthMCL mapping currently working?
- (Mike): Should we fix the dates in the new GAF files to reflect when the annotations were actually made?
- (Mike): Could we re-generate the statistics from the GAF files using a script (rather than manually)?
- (Kara): Can we leverage the annotation reporter to generate the monthly lists in an easier way?