RefGenProgress 2009-07 (Archived): Difference between revisions

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Lots of issues brought up:
Lots of issues brought up:


'''ACTION ITEM''':  Improve definition of GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase


'''ACTION ITEM''': Improve ISS documentation: EcoWiki were using P-POD reference, which is
'''ACTION ITEM''':  Add to SOP's: Agreement that experiments from other organisms should be annotated when annotations in the 12 ref genome organisms are scarce.  Hopwever - who should add those? Anyone? GOA?
'''ACTION ITEM''': Debby could send a link to where E. coli group was looking in the documentation regarding IDA vs IMP for subcellular localization of fusion proteins
'''ACTION ITEM''': (from ruth) next jamboree, decide on proteins, try to encourage ontology experts for relevant branches of the ontology to participate
'''ACTION ITEM''': add equivalent metal ion terms to the ontology for different metal ions
'''ACTION ITEM''': there's a link to the binding term documentation on the talk page - please give feedback to work out a range of opinions before the consortium meeting
'''ACTION ITEM''' create a wiki page where people can start suggesting/annotating genes for future jamborees to encourage broader participation


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Back to [[Reference_Genome_Annotation_Project#Progress_Reports]]
Back to [[Reference_Genome_Annotation_Project#Progress_Reports]]

Revision as of 10:02, 3 August 2009

  • PAINT update:

No new software release, but work in progress allows curators to annotate to parents of terms with annotations.


  • Electronic annotation jamboree: ETFDH and SLC11A1, SLC11A2

Electronic_jamboree_july28-2009

Lots of issues brought up:

ACTION ITEM: Improve definition of GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase

ACTION ITEM: Improve ISS documentation: EcoWiki were using P-POD reference, which is ACTION ITEM: Add to SOP's: Agreement that experiments from other organisms should be annotated when annotations in the 12 ref genome organisms are scarce. Hopwever - who should add those? Anyone? GOA? ACTION ITEM: Debby could send a link to where E. coli group was looking in the documentation regarding IDA vs IMP for subcellular localization of fusion proteins

ACTION ITEM: (from ruth) next jamboree, decide on proteins, try to encourage ontology experts for relevant branches of the ontology to participate

ACTION ITEM: add equivalent metal ion terms to the ontology for different metal ions

ACTION ITEM: there's a link to the binding term documentation on the talk page - please give feedback to work out a range of opinions before the consortium meeting

ACTION ITEM create a wiki page where people can start suggesting/annotating genes for future jamborees to encourage broader participation


Back to Reference_Genome_Annotation_Project#Progress_Reports