RefGenProgress 2009-07 (Archived): Difference between revisions
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'''ACTION ITEM''': Improve definition of GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase | '''ACTION ITEM''': Improve definition of GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase | ||
'''ACTION ITEM''': Improve ISS documentation: EcoWiki were using P-POD reference, which is | '''ACTION ITEM''': Improve ISS documentation: EcoWiki were using P-POD reference, which is not right | ||
'''ACTION ITEM''': Add to SOP's: Agreement that experiments from other organisms should be annotated when annotations in the 12 ref genome organisms are scarce. | |||
'''ACTION ITEM''': Debby could send a link to where E. coli group was looking in the documentation regarding IDA vs IMP for subcellular localization of fusion proteins | '''ACTION ITEM''': Add to SOP's: Agreement that experiments from other organisms should be annotated when annotations in the 12 ref genome organisms are scarce. However - who should add those? Anyone? GOA? | ||
'''ACTION ITEM''': Debby could send a link to where E. coli group was looking in the documentation regarding IDA vs IMP for subcellular localization of fusion proteins. | |||
'''ACTION ITEM''': Add to SOPs: Does a functional assay inform localization? | |||
'''ACTION ITEM''': (from ruth) next jamboree, decide on proteins, try to encourage ontology experts for relevant branches of the ontology to participate | '''ACTION ITEM''': (from ruth) next jamboree, decide on proteins, try to encourage ontology experts for relevant branches of the ontology to participate | ||
Revision as of 10:05, 3 August 2009
- PAINT update:
No new software release, but work in progress allows curators to annotate to parents of terms with annotations.
- Electronic annotation jamboree: ETFDH and SLC11A1, SLC11A2
Electronic_jamboree_july28-2009
Lots of issues brought up:
ACTION ITEM: Improve definition of GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase
ACTION ITEM: Improve ISS documentation: EcoWiki were using P-POD reference, which is not right
ACTION ITEM: Add to SOP's: Agreement that experiments from other organisms should be annotated when annotations in the 12 ref genome organisms are scarce. However - who should add those? Anyone? GOA?
ACTION ITEM: Debby could send a link to where E. coli group was looking in the documentation regarding IDA vs IMP for subcellular localization of fusion proteins.
ACTION ITEM: Add to SOPs: Does a functional assay inform localization?
ACTION ITEM: (from ruth) next jamboree, decide on proteins, try to encourage ontology experts for relevant branches of the ontology to participate
ACTION ITEM: add equivalent metal ion terms to the ontology for different metal ions
ACTION ITEM: there's a link to the binding term documentation on the talk page - please give feedback to work out a range of opinions before the consortium meeting
ACTION ITEM create a wiki page where people can start suggesting/annotating genes for future jamborees to encourage broader participation
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