RefGenProgress 2009-07 (Archived): Difference between revisions
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New software release (Aug 1, 2009), but work in progress allows curators to annotate to parents of terms with annotations. Also - paint now has flexible docking, proper gaf files, proper go hierarchy, some degree of speedup thanks to threading, annotation by dragging terms from the term tree onto the gene info, and highlighting of nodes that share annotations to terms (thanks for the suggestion pascale it really looks great doing this), negation, qualifiers, and more--including some known bugs. | New software release (Aug 1, 2009), but work in progress allows curators to annotate to parents of terms with annotations. Also - paint now has flexible docking, proper gaf files, proper go hierarchy, some degree of speedup thanks to threading, annotation by dragging terms from the term tree onto the gene info, and highlighting of nodes that share annotations to terms (thanks for the suggestion pascale it really looks great doing this), negation, qualifiers, and more--including some known bugs. | ||
* Quest for Orthologs meeting (Hinxton, UK, July 3-5). Pascale, Paul, Suzi, Mike, Judy attended. Included people form all the major orthology resources: In paranoid, OrthoMCL, Treefam, etc. We discussed to use the same protein sets, which will be a major step in comparing all the resources. | |||
* Electronic annotation jamboree: ETFDH and SLC11A1, SLC11A2 | * Electronic annotation jamboree: ETFDH and SLC11A1, SLC11A2 | ||
Revision as of 10:13, 3 August 2009
- PAINT update:
New software release (Aug 1, 2009), but work in progress allows curators to annotate to parents of terms with annotations. Also - paint now has flexible docking, proper gaf files, proper go hierarchy, some degree of speedup thanks to threading, annotation by dragging terms from the term tree onto the gene info, and highlighting of nodes that share annotations to terms (thanks for the suggestion pascale it really looks great doing this), negation, qualifiers, and more--including some known bugs.
- Quest for Orthologs meeting (Hinxton, UK, July 3-5). Pascale, Paul, Suzi, Mike, Judy attended. Included people form all the major orthology resources: In paranoid, OrthoMCL, Treefam, etc. We discussed to use the same protein sets, which will be a major step in comparing all the resources.
- Electronic annotation jamboree: ETFDH and SLC11A1, SLC11A2
Electronic_jamboree_july28-2009
Lots of issues brought up:
ACTION ITEM: Improve definition of GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase
ACTION ITEM: Improve ISS documentation: EcoWiki were using P-POD reference, which is not right
ACTION ITEM: Add to SOP's: Agreement that experiments from other organisms should be annotated when annotations in the 12 ref genome organisms are scarce. However - who should add those? Anyone? GOA?
ACTION ITEM: Debby could send a link to where E. coli group was looking in the documentation regarding IDA vs IMP for subcellular localization of fusion proteins.
ACTION ITEM: Add to SOPs: Does a functional assay inform localization?
ACTION ITEM: (from ruth) next jamboree, decide on proteins, try to encourage ontology experts for relevant branches of the ontology to participate
ACTION ITEM: add equivalent metal ion terms to the ontology for different metal ions
ACTION ITEM: there's a link to the binding term documentation on the talk page - please give feedback to work out a range of opinions before the consortium meeting
ACTION ITEM create a wiki page where people can start suggesting/annotating genes for future jamborees to encourage broader participation
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