RefGenome07Aug07 Phone Conference (Archived): Difference between revisions

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# Judy, Petra, Karen, DongHui and Kimberley summarize how the different [[Tools for identifying orthologs]] work, algorithm explanations, order of preference and pitfalls in identifying orthologs
# Judy, Petra, Karen, DongHui and Kimberley summarize how the different [[Tools for identifying orthologs]] work, algorithm explanations, order of preference and pitfalls in identifying orthologs
# RG software group and some curators will have a phone conference to discuss the new tool
# RG software group and some curators will have a phone conference to discuss the new tool
# Annotation consistency/ quality control: Rex and Pascale will send all the curators on the RG mailing list a list of genes to verify; we'll see how it goes and discuss next time
# Annotation consistency/ quality control: Rex and Pascale will send all the curators on the RG mailing list a list of genes to verify; we'll see how it goes and discuss next time. See example [[ATPAF2]]
# Continue discussion on [[Outreach: publicizing the project and developing a web presence]] (lead by Susan and Rex)  
# Continue discussion on [[Outreach: publicizing the project and developing a web presence]] (lead by Susan and Rex)  
# Continue discussion on [[Metrics: breath and depth of annotations]] (Rex, Judy, Ruth)
# Continue discussion on [[Metrics: breath and depth of annotations]] (Rex, Judy, Ruth)

Revision as of 18:50, 6 August 2007

Review Action Items

Tuesday August 7, 2007, 10 AM CDT (8 AM PDT, 4 PM BST)

  1. Judy, Petra, Karen, DongHui and Kimberley summarize how the different Tools for identifying orthologs work, algorithm explanations, order of preference and pitfalls in identifying orthologs
  2. RG software group and some curators will have a phone conference to discuss the new tool
  3. Annotation consistency/ quality control: Rex and Pascale will send all the curators on the RG mailing list a list of genes to verify; we'll see how it goes and discuss next time. See example ATPAF2
  4. Continue discussion on Outreach: publicizing the project and developing a web presence (lead by Susan and Rex)
  5. Continue discussion on Metrics: breath and depth of annotations (Rex, Judy, Ruth)

Curation QC

  • example: ATPAF2
  • The idea is each curator (or a small group of curators) could generate a page like this when curating a gene; other groups could consult the page when curating the ortholog from their database

Curation Targets

  • We have now shared a spreadsheet where curators can make suggestions for targets

[[1]]

  • RGD (Mary Shimoyama) sent two lists: one of neurological and cardiovascular diseases (692 genes); the other with genes associated with obesity (1222 genes).

Reference genome curation tool

  • Sohel has made a new version of the interface

http://rails-dev.bioinformatics.northwestern.edu:24000/

  • Keep sending comments

Reference_Genome_Database_Requirements_Discussion; however since Sohel leaves July 31, development will be delayed

Next meeting

Tuesday Sept 10, 1 PM CDT (11 AM PDT, 7 PM BST)