RefGenome10July07 Phone Conference (Archived)

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Agenda

Reference Genome meeting update

Tuesday July 10, 1 PM CDT (11 AM PDT, 7 PM BST)

Review Action Items

  1. ACTION ITEM: Judy, Petra, Karen, DongHui and Kimberley overview of how the different Tools for identifying orthologs work, algorithm explanations, order of preference and pitfalls in identifying orthologs
  2. ACTION ITEM: Rex, Pascale, Emily will summarize the Strategy used to identifying target genes and suggest possible improvements
  3. ACTION ITEM: Rex, Karen, Emily, Susan will write a list of information needed from curators to measure Annotation progress
  4. ACTION ITEM: Rex, Judy, Ruth will summarize ideas on to how to capture Metrics: breath and depth of annotations
  5. ACTION ITEM: Mary, Sohel, Chris will send a summary of what is being done by the Software group
  6. ACTION ITEM: Pascale, Donghui will provide a framework for discussing Consistency of annotations across genomes
  7. ACTION ITEM: Susan and Rex will present suggestions for Outreach: publicizing the project and developing a web presence

Annotation Progress

  • How many of the human genes have orthologs identified ?
  • How many of these have papers associated (are published genes) ?
  • How many papers associated in total ?
  • How many papers have been considered for GO curation ?
  • How many papers provided GO terms ?
  • How many genes which have papers associated are considered complete/comprehensive ?

Issues with target genes

  • pombe (Val): takes a long time to triage papers
  • GOA, pombe: too many genes per month
  • If too many groups are falling behind, we should consider skipping August
  • not enough coordination between annotation efforts
  • pombe/dictyBase: We would like to know when other databases have completed annotation

- Judy suggestion: Change from 'complete' to 'comprehensive'
- Pascale: did we not have a wiki for doing that?


Next meeting

Tuesday August 14, 10 AM CDT (8 AM PDT, 4 PM BST)