RefGenome12Jun07 Phone Conference (Archived): Difference between revisions
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*Strategies for identifying orthologs: now = YOGY, inparanoid, treefam | *Strategies for identifying orthologs: now = YOGY, inparanoid, treefam | ||
'''Judy, Petra, Karen, DongHui and Kimberley''' | |||
- one issue is about using consistent strategies | - one issue is about using consistent strategies | ||
- we'd like to call in an expert at the meeting to help us | |||
- Judy: orthology analysis: we want to have tools but we need to make sure we dont user-infer from that | |||
- Rex: it's about specificity/ | |||
- KarenC: different tools give different results; I'd like to know why and understand how those tools work | |||
-Judy: I completely agree. We need to have by the meeting a white paper about how those tools work to provide a basis for discussion | |||
-Kimberley: also noticed different results with different tools | |||
-Emily: GAO has started to transfer electronic annotations; it's hard to keep track of the orthology information with different genome versions, especially for multispecies databases | |||
-MaryD/David: we'd like to to produce a tool that would help make ISS annotations | |||
- Emily: if this is automated, it should be IEA | |||
# Review annotation stats. | # Review annotation stats. |
Revision as of 11:17, 12 June 2007
Attendees
- Rex Chisholm (dictyBase)
- Petra Fey (dictyBase)
- Pascale Gaudet (dictyBase)
- Karen Christie (SGD)
- Eurie Hong (SGD)
- Ruth Lovering (HGNC)
- Fiona McCarthy (AgBase)
- Judy Blake (MGI)
- David Hill (MGI)
- Harold Drabkin (MGI)
- Mary Dolan (MGI)
- Emily Dimmer (GOA)
- Kimberly Van Auken (wormbase)
- Donghui Li(TAIR)
- Doug Howe (zfin)
- Susan Tweedie (flybase)
Agenda
- Discuss agenda items for meeting
- Plan to develop proposals for main issues on agenda
- We should be able to have the meeting at Princeton after the GOC meeting
- Strategies for identifying orthologs: now = YOGY, inparanoid, treefam
Judy, Petra, Karen, DongHui and Kimberley
- one issue is about using consistent strategies - we'd like to call in an expert at the meeting to help us - Judy: orthology analysis: we want to have tools but we need to make sure we dont user-infer from that - Rex: it's about specificity/ - KarenC: different tools give different results; I'd like to know why and understand how those tools work -Judy: I completely agree. We need to have by the meeting a white paper about how those tools work to provide a basis for discussion -Kimberley: also noticed different results with different tools -Emily: GAO has started to transfer electronic annotations; it's hard to keep track of the orthology information with different genome versions, especially for multispecies databases -MaryD/David: we'd like to to produce a tool that would help make ISS annotations - Emily: if this is automated, it should be IEA
- Review annotation stats.
- Regular monthly phone conference. Use to review stats, open ref genome source forge items
- Other issues? (no other issues)