Difference between revisions of "Reference Genome Annotation Meeting"

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* Which model organisms are available in which databases, e.g. Dicty is not in Treefam
 
* Which model organisms are available in which databases, e.g. Dicty is not in Treefam
  
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===How to prioritize disease genes===
 
===How to prioritize disease genes===
 
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===How to assess the progress made towards curation of reference genome genes; strategies for improvement===
 
===How to assess the progress made towards curation of reference genome genes; strategies for improvement===
 
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===Review of progress toward database and tool development===
 
===Review of progress toward database and tool development===
 
* Chris, Sohel and Mary are developing a web-based tool that will replace the currant [http://dcn.spreadsheets.google.com/ccc?id=o16926456948884040128.4584390909151853752.07000735126025259412.442372083524637957 Google spreadsheet]
 
* Chris, Sohel and Mary are developing a web-based tool that will replace the currant [http://dcn.spreadsheets.google.com/ccc?id=o16926456948884040128.4584390909151853752.07000735126025259412.442372083524637957 Google spreadsheet]
 
* Demonstration of the tool (link to a page with the tool coming soon)
 
* Demonstration of the tool (link to a page with the tool coming soon)
 
* Curator input for further development
 
* Curator input for further development
 
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===Discussions regarding metrics, including making a plan for how to use metrics===
 
===Discussions regarding metrics, including making a plan for how to use metrics===
 
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===Annotation consistency exercise===
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===Annotation consistency issues===

Revision as of 10:18, 7 June 2007

General Info

Agenda

Strategies to identify orthologs

  • Procedures different databases are using can be found on the Orthology discussion page
  • Standardize procedure for identification across MODs
  • Which model organisms are available in which databases, e.g. Dicty is not in Treefam

How to prioritize disease genes


How to assess the progress made towards curation of reference genome genes; strategies for improvement


Review of progress toward database and tool development

  • Chris, Sohel and Mary are developing a web-based tool that will replace the currant Google spreadsheet
  • Demonstration of the tool (link to a page with the tool coming soon)
  • Curator input for further development

Discussions regarding metrics, including making a plan for how to use metrics


Annotation consistency issues