Reference Genome Data Management and Reporting: Difference between revisions
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Project lead: Sven Heinicke | Project lead: Sven Heinicke | ||
Additional personnel: Mary Dolan | |||
Coordinates with: Reference Genome group. | |||
== Purpose == | == Purpose == | ||
The [[Reference Genome]] group requires detailed reporting and tracking to ensure coordination of annotation and that targets are met. This reporting is also of interest to a wider community. | The [[Reference Genome]] group requires detailed reporting and tracking to ensure coordination of annotation and that targets are met. This reporting is also of interest to a wider community. All reports should be derived from the database. | ||
== Background == | == Background == | ||
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* See also the related [[AmiGO_Phylotrees]] project | * See also the related [[AmiGO_Phylotrees]] project | ||
== == | == Deliverables == | ||
=== load gp2pthr === | |||
Loading seq2pthr files. Resolve ID issues. | |||
Also requires loading qfo fasta to get full gp info until we have full gp tables | |||
Status: mostly done, some ID issues remaining (Mary to check) | |||
=== basic report === | |||
* summary page for browsing all families | |||
* per-family pages | |||
status: DONE; but more enhancements required, see below | |||
=== excel downloads === | |||
Mary to do | |||
=== load_nhx === | |||
We want to load the full .NHX files from panther to get the intermediate nodes (AN:xxx) branchlens etc in a normalized form | |||
=== GOOOSE_queries === | |||
Demonstrate advanced querying in GOOSE | |||
=== advanced_query_interface === | |||
[[Category:SWUG Projects]] | [[Category:SWUG Projects]] | ||
Revision as of 22:59, 21 August 2010
Project lead: Sven Heinicke Additional personnel: Mary Dolan
Coordinates with: Reference Genome group.
Purpose
The Reference Genome group requires detailed reporting and tracking to ensure coordination of annotation and that targets are met. This reporting is also of interest to a wider community. All reports should be derived from the database.
Background
- See also the related AmiGO_Phylotrees project
Deliverables
load gp2pthr
Loading seq2pthr files. Resolve ID issues.
Also requires loading qfo fasta to get full gp info until we have full gp tables
Status: mostly done, some ID issues remaining (Mary to check)
basic report
- summary page for browsing all families
- per-family pages
status: DONE; but more enhancements required, see below
excel downloads
Mary to do
load_nhx
We want to load the full .NHX files from panther to get the intermediate nodes (AN:xxx) branchlens etc in a normalized form
GOOOSE_queries
Demonstrate advanced querying in GOOSE