Reference Genome January 2010 (Archived): Difference between revisions
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===GO reference genome annotation camp=== | ===GO reference genome annotation camp=== | ||
* GO annotation camp will be help in Geneva, Switzerland, June 16-18 2010 | |||
* Information can be found here: [[2010 GO camp Meeting Logistics]] | |||
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==Lung development project== | ==Lung development project== | ||
The last set of targets for the lung development project has been sent. We aim to have all annotations done by March 1st in order to annotate the trees between March and April 2010. | The last set of targets for the lung development project has been sent. We aim to have all annotations done by March 1st in order to annotate the trees between March and April 2010. | ||
Revision as of 12:16, 1 February 2010
Announcements
Electronic annotation jamboree
- The 5th electronic annotation jamboree will take place on Feb 22, 2010, at 4pm BST/11 am eastern/8 am pacific to 6pm BST/1pm eastern/10 am pacific
- Agenda /minutes are here : Electronic_jamboree_feb22-2010
- annotation targets are : SLIT2 and NIPBL
GO reference genome annotation camp
- GO annotation camp will be help in Geneva, Switzerland, June 16-18 2010
- Information can be found here: 2010 GO camp Meeting Logistics
Lung development project
The last set of targets for the lung development project has been sent. We aim to have all annotations done by March 1st in order to annotate the trees between March and April 2010.
PAINT update
- Process annotations can now be done using a grid view, in addition to the tree view. Ed Lee is working on extending this to F and C.
PPOD update
Kara and her group did a new run on the 12 Reference Genome protein sets using a new version of OrthoMCL. These results are viewable on the web. In addition, we ran OrthoMCL on all 48 PANTHER species for incorporation into PAINT; currently, these data are only available for bulk download because we have not yet scaled our web interface to handle the much larger families.
Note that the PPOD IDs have changed from previous versions. Kara is working on having all the information re-mapped in the google spreadsheets by the next Ref Genome call. [edit]
GO mirror at Princeton
- Princeton has set up a GO mirror
Monthly conference call
Was held January 12. Minutes are available here: http://gocwiki.geneontology.org/index.php/12_JAN_2010_RefGen_Phone_Conference
Back to Reference_Genome_Annotation_Project#Progress_Reports