Reference Genome progress report for 2010 (Archived): Difference between revisions
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==Publications/communications== | ==Publications/communications== | ||
* Conference calls are held every month to discuss annotation target prioritization, annotation issues, development of the PAINT software, requirements for uploading PAINT generated GAF files, and other issues relevant to the reference genome group. | |||
==Annotation camp== | |||
The 3rd Gene Ontology’s Annotation Camp was held from June 16-18 2010 at the Centre Medical Universitaire (CMU) Geneva, Switzerland. The Gene Ontology project (GO) provides a set of controlled vocabularies for use in annotation of gene products (http://geneontology.org/). Members from several model organism databases were represented, for a total of 63 attendees, including 40 from the SIB and 23 external delegates. This annotation camp aimed to update and refine the skills of GO biocurators, including the Swiss-Prot curation team. The major themes of the meeting covered processes difficult to represent in the Gene Ontology such as regulation, responses to stimulus, and protein complexes. The goal is to improve annotation consistency for GO users to have high quality data to support their work. | |||
==Curation Targets== | ==Curation Targets== | ||
As of November 2009, the selection of the curation targets is done from a 'systems' perspective, for example with respect to a biological pathway. | |||
===Number of families annotated=== | ===Number of families annotated=== | ||
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==Electronic annotation jamborees== | ==Electronic annotation jamborees== | ||
* [[Electronic_jamboree_feb22-2010]]: SLIT2 and NIPBL | |||
Revision as of 09:09, 17 November 2010
Publications/communications
- Conference calls are held every month to discuss annotation target prioritization, annotation issues, development of the PAINT software, requirements for uploading PAINT generated GAF files, and other issues relevant to the reference genome group.
Annotation camp
The 3rd Gene Ontology’s Annotation Camp was held from June 16-18 2010 at the Centre Medical Universitaire (CMU) Geneva, Switzerland. The Gene Ontology project (GO) provides a set of controlled vocabularies for use in annotation of gene products (http://geneontology.org/). Members from several model organism databases were represented, for a total of 63 attendees, including 40 from the SIB and 23 external delegates. This annotation camp aimed to update and refine the skills of GO biocurators, including the Swiss-Prot curation team. The major themes of the meeting covered processes difficult to represent in the Gene Ontology such as regulation, responses to stimulus, and protein complexes. The goal is to improve annotation consistency for GO users to have high quality data to support their work.
Curation Targets
As of November 2009, the selection of the curation targets is done from a 'systems' perspective, for example with respect to a biological pathway.
Number of families annotated
PAINT updates
PAINT-based annotations
Visualizing PAINT annotations with Pantree
Electronic annotation jamborees
- Electronic_jamboree_feb22-2010: SLIT2 and NIPBL