Reference Genome sequence annotation (Retired): Difference between revisions

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{| border="1"
{| border="1"
|Organism
|'''Organism'''
|Organization
|'''Organization'''
|Download
|'''Download'''
|Date
|'''Date'''
|-
|-
|Drosphila melanogaster (Fruitfly)
|Drosphila melanogaster (Fruitfly)
|FlyBase
|[http://www.flybase.org FlyBase]
|ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff  
|ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff  
|9/12/07
|9/12/07
|-
|-
|(worm)
|Caenorhabditis elegans (Worm)
|WormBase
|[http://www.wormbase.org WormBase]
|ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3
|ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3
|-
|Saccharomyces cerevisiae (Budding yeast)
|[http://www.yeastgenome.org SGD]
|ftp://ftp.stanford.edu/pub/yeast/chromosomal_feature/saccharomyces_cerevisiae.gff
|}
|}

Revision as of 12:53, 14 September 2007

The Reference Genome initiative will foster SO compliant annotations. The sequences will be available using the file format GFF3.


Organism Organization Download Date
Drosphila melanogaster (Fruitfly) FlyBase ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff 9/12/07
Caenorhabditis elegans (Worm) WormBase ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3
Saccharomyces cerevisiae (Budding yeast) SGD ftp://ftp.stanford.edu/pub/yeast/chromosomal_feature/saccharomyces_cerevisiae.gff