Reference Genome sequence annotation (Retired): Difference between revisions

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|7/16/07
|7/16/07
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|Zebrafish
|Danio rerio (Zebrafish)
|[http://www.zfin.org ZFIN]
|[http://zfin.org/cgi-bin/webdriver?MIval=aa-ZDB_home.apg ZFIN]
|?  
|?  
|?
|?
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|?
|?
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|Pombe ()
|Schizosaccharomyces pombe (Fission yeast)
|[http://www.sanger.ac.uk/Projects/S_pombe/ Sanger Centre]
|[http://www.sanger.ac.uk/Projects/S_pombe/ Sanger Centre]
|?
|ftp://ftp.sanger.ac.uk/pub/yeast/pombe/GFF/
|?
|3/16/07
|-
|-
|E.coli
|E.coli
|[http://asap.ahabs.wisc.edi ASAP]
|[http://asap.ahabs.wisc.edi ASAP]
|https://asap.ahabs.wisc.edu/asap/download_gff3.php?LocationID=&SequenceVersionID=&GenomeID=
|https://asap.ahabs.wisc.edu/asap/download_gff3.php?LocationID=&SequenceVersionID=&GenomeID=
|?
|-
|Rat
|[http://rgd.mcw.edu/ RGD]
|?
|?
|?
|-
|-
|}
|}

Revision as of 13:17, 14 September 2007

The Reference Genome initiative will foster SO compliant annotations. The sequences will be available using the file format GFF3.


Organism Organization Download Date
Drosophila melanogaster (Fruitfly) FlyBase ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff 9/12/07
Caenorhabditis elegans (Worm) WormBase ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3 ?
Saccharomyces cerevisiae (Budding yeast) SGD ftp://ftp.stanford.edu/pub/yeast/chromosomal_feature/saccharomyces_cerevisiae.gff ?
Arabidopsis Gramene ftp://ftp.gramene.org/pub/gramene/release19/data/sequence_annotation/gff3 7/16/07
Danio rerio (Zebrafish) ZFIN ? ?
Mouse MGI ? ?
Human ? ? ?
Schizosaccharomyces pombe (Fission yeast) Sanger Centre ftp://ftp.sanger.ac.uk/pub/yeast/pombe/GFF/ 3/16/07
E.coli ASAP https://asap.ahabs.wisc.edu/asap/download_gff3.php?LocationID=&SequenceVersionID=&GenomeID= ?
Rat RGD ? ?