Reference Genome sequence annotation (Retired): Difference between revisions
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|[http://www.jax.org MGI] | |[http://www.informatics.jax.org/ MGI] | ||
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Revision as of 13:19, 14 September 2007
The Reference Genome initiative will foster SO compliant annotations. The sequences will be available using the file format GFF3.
| Organism | Organization | Download | Date |
| Drosophila melanogaster (Fruitfly) | FlyBase | ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff | 9/12/07 |
| Caenorhabditis elegans (Worm) | WormBase | ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3 | ? |
| Saccharomyces cerevisiae (Budding yeast) | SGD | ftp://ftp.stanford.edu/pub/yeast/chromosomal_feature/saccharomyces_cerevisiae.gff | ? |
| Arabidopsis | Gramene | ftp://ftp.gramene.org/pub/gramene/release19/data/sequence_annotation/gff3 | 7/16/07 |
| Danio rerio (Zebrafish) | ZFIN | ? | ? |
| Mouse | MGI | ? | ? |
| Human | ? | ? | ? |
| Schizosaccharomyces pombe (Fission yeast) | Sanger Centre | ftp://ftp.sanger.ac.uk/pub/yeast/pombe/GFF/ | 3/16/07 |
| E.coli | ASAP | https://asap.ahabs.wisc.edu/asap/download_gff3.php?LocationID=&SequenceVersionID=&GenomeID= | ? |
| Rat | RGD | ? | ? |