Reference Genome sequence annotation (Retired): Difference between revisions
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{| border="1" | {| border="1" | ||
|+align="bottom" style="color:#e76700;"|''Where to find SO compliant GFF3 annotations for the Reference Genome sequences.'' | |||
|'''Organism''' | |'''Organism''' | ||
|'''Organization''' | |'''Organization''' |
Revision as of 14:03, 14 September 2007
The Reference Genome initiative will foster SO compliant annotations. The sequences will be available using the file format GFF3.
Organism | Organization | Download | Date |
Drosophila melanogaster (Fruitfly) | FlyBase | ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/current/gff | 9/12/07 |
Caenorhabditis elegans (Worm) | WormBase | ftp://ftp.wormbase.org/pub/wormbase/genomes/elegans/genome_feature_tables/GFF3 | ? |
Saccharomyces cerevisiae (Budding yeast) | SGD | ftp://ftp.stanford.edu/pub/yeast/chromosomal_feature/saccharomyces_cerevisiae.gff | ? |
Arabidopsis | Gramene | ftp://ftp.gramene.org/pub/gramene/release19/data/sequence_annotation/gff3 | 7/16/07 |
Danio rerio (Zebrafish) | ZFIN | ? | ? |
Mouse | MGI | ? | ? |
Human | ? | ? | ? |
Schizosaccharomyces pombe (Fission yeast) | Sanger Centre | ftp://ftp.sanger.ac.uk/pub/yeast/pombe/GFF/ | 3/16/07 |
E.coli | ASAP | https://asap.ahabs.wisc.edu/asap/download_gff3.php?LocationID=&SequenceVersionID=&GenomeID= | ? |
Rat | RGD | ? | ? |