Regulation Main Page: Difference between revisions
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* January | * January | ||
** Documentation of creating regulates | ** Documentation of creating regulates DONE | ||
*** investigate how to create regulates terms in the future (use test file in scratch directory) | *** investigate how to create regulates terms in the future (use test file in scratch directory) | ||
** Review some cases from part_of relationships that exist in BP to test 'regulation is transitive over part_of' rule | ** Review some cases from part_of relationships that exist in BP to test 'regulation is transitive over part_of' rule | ||
** Go through the No_target lines from Chris' QC report | ** Go through the No_target lines from Chris' QC report DONE | ||
** Begin on the No_parse list | ** Begin on the No_parse list | ||
*** Chris needs to whittle down the no_parse list to get rid of the ones we already looked at | *** Chris needs to whittle down the no_parse list to get rid of the ones we already looked at |
Revision as of 16:30, 29 February 2008
Personnel:
- Chris Mungall
- Tanya Berardini
- David Hill
- John Day-Richter
- Jane Lomax
TIMELINE
- January
- Documentation of creating regulates DONE
- investigate how to create regulates terms in the future (use test file in scratch directory)
- Review some cases from part_of relationships that exist in BP to test 'regulation is transitive over part_of' rule
- Go through the No_target lines from Chris' QC report DONE
- Begin on the No_parse list
- Chris needs to whittle down the no_parse list to get rid of the ones we already looked at
- Documentation of creating regulates DONE
- February
- Finish No_parse list
- Review Second error report: scratch/regulation-unimplied-links.txt|| where the regulates hierarchy doesn't parallel the process hierarchy.
- Review third report: scratch/regulation-newlinks.txt in which the transitivity over part_of has been implemented.
- Review and begin to fix problems in BP ontology that have to do with multiple part_of parentage of certain terms, file to look at is
mp-asserted.txt (email from cjm, 1-17-08) transitive over part_of documentation
- March 17 look at a dummy file of what gene_ontology_edit.obo would look like with the new rel-ships and tags in place to make sure everything looks ok
- March 25 FINAL IMPLEMENTATION (regulates tags in gene_ontology_edit.obo)