Regulation Main Page

Personnel:

• Chris Mungall
• Tanya Berardini
• David Hill
• John Day-Richter
• Jane Lomax

TIMELINE

• January
  • Documentation of creating regulates
    • investigate how to create regulates terms in the future (use test file in scratch directory)
  • Review some cases from part_of relationships that exist in BP to test 'regulation is transitive over part_of' rule
  • Go through the No_target lines from Chris' QC report
  • Begin on the No_parse list
    • Chris needs to whittle down the no_parse list to get rid of the ones we already looked at
• February
  • Finish No_parse list
  • Review Second error report: scratch/regulation-unimplied-links.txt|| where the regulates hierarchy doesn't parallel the process hierarchy.
  • Review third report: scratch/regulation-newlinks.txt in which the transitivity over part_of has been implemented.
    • Review and fix problems in BP ontology that have to do with multiple part_of parentage of certain terms, file to look at is

mp-asserted.txt (email from cjm, 1-17-08) transitive over part_of documentation

• March 18 FINAL IMPLEMENTATION (regulates tags and intersection tags in gene_ontology_edit.obo)

Implementation Plan

Regulates- Meeting Minutes

Regulation cross-products