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(Created page with "== Per-group curator QC reports == Every day a dry-run of the full pipeline runs. We call this __snapshot__. As part of this run, we generate *products* and *reports* that ar...") |
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== Per-group curator QC reports == | == Per-group curator QC reports == | ||
Every day a dry-run of the full pipeline runs. We call this | Every day a dry-run of the full pipeline runs. We call this '''snapshot'''. As part of this run, we generate ''products'' and ''reports'' that are of use to db admins and curators of the various contributing groups (MODs, UniProt, etc) to the GO Consortium. | ||
*http://snapshot.geneontology.org/reports/ | *http://snapshot.geneontology.org/reports/ | ||
** summary.txt. EXAMPLE: [http://snapshot.geneontology.org/reports/dictybase- | ** summary.txt. EXAMPLE: [http://snapshot.geneontology.org/reports/dictybase.report.md dictybase.report.md] | ||
** prediction-report.txt EXAMPLE: [http://snapshot.geneontology.org/reports/mgi-prediction-report.txt mgi-prediction-report.txt] | |||
** owltools-check.txt EXAMPLE: [http://snapshot.geneontology.org/reports/mgi-owltools-check.txt mgi-owltools-check.txt] | |||
*http://snapshot.geneontology.org/products/annotations/ | *http://snapshot.geneontology.org/products/annotations/ | ||
** GROUP-prediction.gaf EXAMPLE: [ | ** GROUP-prediction.gaf EXAMPLE: [http://snapshot.geneontology.org/products/annotations/pombase-prediction.gaf pombase-prediction.gaf] | ||
=== Summary === | |||
This is a basic summary of the parsing of your GAF file. It functionally replaces the old "Mike's script" | |||
These are found in [http://snapshot.geneontology.org/reports/ reports] | |||
Example: http://snapshot.geneontology.org/reports/dictybase.report.md | |||
These report basic syntax errors and implement a subset of checks in the [[GO QC Rules]] | |||
=== Prediction Report and OwlTools Checks === | |||
=== Predictions === | |||
== Technical Details == | == Technical Details == |
Revision as of 19:01, 29 March 2018
Per-group curator QC reports
Every day a dry-run of the full pipeline runs. We call this snapshot. As part of this run, we generate products and reports that are of use to db admins and curators of the various contributing groups (MODs, UniProt, etc) to the GO Consortium.
- http://snapshot.geneontology.org/reports/
- summary.txt. EXAMPLE: dictybase.report.md
- prediction-report.txt EXAMPLE: mgi-prediction-report.txt
- owltools-check.txt EXAMPLE: mgi-owltools-check.txt
- http://snapshot.geneontology.org/products/annotations/
- GROUP-prediction.gaf EXAMPLE: pombase-prediction.gaf
Summary
This is a basic summary of the parsing of your GAF file. It functionally replaces the old "Mike's script"
These are found in reports
Example: http://snapshot.geneontology.org/reports/dictybase.report.md
These report basic syntax errors and implement a subset of checks in the GO QC Rules
Prediction Report and OwlTools Checks
Predictions
Technical Details
See the README.md in the github repo: https://github.com/geneontology/pipeline/blob/snapshot/README.md