Restoring an Obsolete Ontology Term: Difference between revisions
Jump to navigation
Jump to search
mNo edit summary |
mNo edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
See [[Ontology_Editors_Daily_Workflow]] for creating branches and basic Protégé instructions. | See [[Ontology_Editors_Daily_Workflow]] for creating branches and basic Protégé instructions. | ||
==Notification== | |||
Send an email notification to <code>go-friends@mailman.stanford.edu</code> and create a ticket with the same notification in the '''[https://github.com/geneontology/go-announcements GitHub Announcements Tracker]'''. | |||
==Protégé Process for Restoring an Obsolete Ontology Term== | |||
# Navigate to the obsolete term | # Navigate to the obsolete term | ||
# In the annotation window: | # In the annotation window: | ||
#* Modify the term label to remove 'obsolete' | #* Modify the term label to remove 'obsolete' | ||
#* Modify the term definition to remove 'OBSOLETE.' | #* Modify the term definition to remove 'OBSOLETE.' | ||
#* Update the comment to Note that this term was reinstated from obsolete. | #* Update the comment to <code>Note that this term was reinstated from obsolete. </code> | ||
#* Remove any replaced_by and consider tags by clicking on the (x) at the right-hand side | #* Remove any replaced_by and consider tags by clicking on the (x) at the right-hand side | ||
#* Add Subclasses as appropriate | #* Add Subclasses as appropriate | ||
Line 12: | Line 16: | ||
# Run the reasoner | # Run the reasoner | ||
# Save. | # Save. | ||
See [[Ontology_Editors_Daily_Workflow]] for commit, push and merge instructions. | See [[Ontology_Editors_Daily_Workflow]] for commit, push and merge instructions. | ||
== Review Status == | |||
Last reviewed: April 5, 2019 | |||
[[Ontology_Development#Editing_the_Ontology |Back to: Editing the Ontology]] | |||
[[Category:Ontology]][[Category:GO Editors]][[Category:Editor_Guide_2018]] | [[Category:Ontology]][[Category:GO Editors]][[Category:Editor_Guide_2018]] |
Revision as of 10:34, 5 April 2019
See Ontology_Editors_Daily_Workflow for creating branches and basic Protégé instructions.
Notification
Send an email notification to go-friends@mailman.stanford.edu
and create a ticket with the same notification in the GitHub Announcements Tracker.
Protégé Process for Restoring an Obsolete Ontology Term
- Navigate to the obsolete term
- In the annotation window:
- Modify the term label to remove 'obsolete'
- Modify the term definition to remove 'OBSOLETE.'
- Update the comment to
Note that this term was reinstated from obsolete.
- Remove any replaced_by and consider tags by clicking on the (x) at the right-hand side
- Add Subclasses as appropriate
- Remove the owl:deprecated: true tag
- Run the reasoner
- Save.
See Ontology_Editors_Daily_Workflow for commit, push and merge instructions.
Review Status
Last reviewed: April 5, 2019