Restoring an Obsolete Ontology Term: Difference between revisions

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   See [[Ontology_Editors_Daily_Workflow]] for creating branches and basic Protégé instructions.
   See [[Ontology_Editors_Daily_Workflow]] for creating branches and basic Protégé instructions.


# '''Notification:''' Send an email notification to <code>go-friends@mailman.stanford.edu</code> and create a ticket with the same announcement in the '''[https://github.com/geneontology/go-announcements GitHub Announcements Tracker]'''.
==Notification==
Send an email notification to <code>go-friends@mailman.stanford.edu</code> and create a ticket with the same notification in the '''[https://github.com/geneontology/go-announcements GitHub Announcements Tracker]'''.
 
==Protégé Process for Restoring an Obsolete Ontology Term==
# Navigate to the obsolete term
# Navigate to the obsolete term
# In the annotation window:  
# In the annotation window:  
#* Modify the term label to remove 'obsolete'   
#* Modify the term label to remove 'obsolete'   
#* Modify the term definition to remove 'OBSOLETE.'  
#* Modify the term definition to remove 'OBSOLETE.'  
#* Update the comment to Note that this term was reinstated from obsolete.
#* Update the comment to <code>Note that this term was reinstated from obsolete. </code>
 
#* Remove any replaced_by and consider tags by clicking on the (x) at the right-hand side
#* Remove any replaced_by and consider tags by clicking on the (x) at the right-hand side
#* Add Subclasses as appropriate
#* Add Subclasses as appropriate
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# Run the reasoner
# Run the reasoner
# Save.
# Save.


   See [[Ontology_Editors_Daily_Workflow]] for commit, push and merge instructions.
   See [[Ontology_Editors_Daily_Workflow]] for commit, push and merge instructions.
== Review Status ==
Last reviewed: April 5, 2019
[[Ontology_Development#Editing_the_Ontology |Back to: Editing the Ontology]]


[[Category:Ontology]][[Category:GO Editors]][[Category:Editor_Guide_2018]]
[[Category:Ontology]][[Category:GO Editors]][[Category:Editor_Guide_2018]]

Revision as of 10:34, 5 April 2019

 See Ontology_Editors_Daily_Workflow for creating branches and basic Protégé instructions.

Notification

Send an email notification to go-friends@mailman.stanford.edu and create a ticket with the same notification in the GitHub Announcements Tracker.

Protégé Process for Restoring an Obsolete Ontology Term

  1. Navigate to the obsolete term
  2.  In the annotation window:
    • Modify the term label to remove 'obsolete'
    • Modify the term definition to remove 'OBSOLETE.'
    • Update the comment to Note that this term was reinstated from obsolete.
    • Remove any replaced_by and consider tags by clicking on the (x) at the right-hand side
    • Add Subclasses as appropriate
    • Remove the owl:deprecated: true tag
  1. Run the reasoner
  2.  Save.


 See Ontology_Editors_Daily_Workflow for commit, push and merge instructions.

Review Status

Last reviewed: April 5, 2019


Back to: Editing the Ontology