Difference between revisions of "Review of trees-based annotations (Retired)"

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(To-do List based on monthly Reference Genome gene targets)
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= DONE =
+
This is the central site for viewing/reviewing the tree based annotations done via PAINT.
  
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 
  
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
+
= Families ready for or under review by MODs =
  
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
+
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
  
 
* CPS1 family : [[Panther ID:11014]], Mike Livstone.  Done July 2009.
 
* CPS1 family : [[Panther ID:11014]], Mike Livstone.  Done July 2009.
  
 
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
 
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
 
  
 
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
 
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
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*[[PANTHER10977]]: MVD family, Kara
 
*[[PANTHER10977]]: MVD family, Kara
 
*[[PANTHER15653]]: Striatin family, Mike.
 
*[[PANTHER15653]]: Striatin family, Mike.
= PENDING =
 
  
None currently
+
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF =
 +
 
 +
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
 +
 
 +
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
 +
 
 +
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
  
= To-do List based on monthly Reference Genome gene targets =
+
= TO-DO LIST (based on monthly Reference Genome gene targets) =
  
 
These are the July/August gene annotation targets.
 
These are the July/August gene annotation targets.
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*[[PTHR11679]]
 
*[[PTHR11679]]
 
*[[PTHR11200]]
 
*[[PTHR11200]]
 +
 +
= DONE: incorporated into the MODs =
 +
 +
None currently

Revision as of 10:11, 9 November 2009

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • RRS1 family: PANTHER17602, Mike Livstone. Completed 8/24/09. No annotations inferred.
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

Families based on recent Ref Genome gene targets:

July Targets

PENDING: annotation is complete, but there is an issue with PAINT or the GAF

  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.
  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

These are the July/August gene annotation targets.

July

August

DONE: incorporated into the MODs

None currently