Difference between revisions of "Review of trees-based annotations (Retired)"

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(Families ready for or under review by MODs)
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= Families ready for or under review by MODs =
 
= Families ready for or under review by MODs =
  
*[[]]: --- family, Mike Livstone
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(wrangling with PAINT to get MVD family, one other family in time for tomorrow.  Will include links to DAG image, HTML tables, etc if we can generate the right GAFs in time)
*[[PANTHER10977]]: MVD family, Kara
 
  
 
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT =
 
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT =

Revision as of 11:48, 9 November 2009

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

(wrangling with PAINT to get MVD family, one other family in time for tomorrow. Will include links to DAG image, HTML tables, etc if we can generate the right GAFs in time)

PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

Families based on recent Ref Genome gene targets:

July Targets

  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.
  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred.