Difference between revisions of "Review of trees-based annotations (Retired)"

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(Families ready for or under review by MODs)
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* [[PANTHER10977]]: MVD Family, done by Kara
 
* [[PANTHER10977]]: MVD Family, done by Kara
* [[PANTHER11014]]: CPS1 Family, done by Mike Livstone
+
* [[Panther ID:11014]]: CPS1 Family, done by Mike Livstone, Done July 2009
  
 
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT =
 
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT =
  
 
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 
* CPS1 family : [[Panther ID:11014]], Mike Livstone.  Done July 2009.
 
  
 
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
 
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.

Revision as of 09:20, 10 November 2009

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

Please note these are here as an example for the Ref Genome Call today. GAFs need to be fixed.

PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

Families based on recent Ref Genome gene targets:

July Targets

  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.
  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred.