Difference between revisions of "Review of trees-based annotations (Retired)"

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m (changed h1 to h2 for better readability)
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= Families ready for or under review by MODs =
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== Families ready for or under review by MODs ==
  
 
'''Please note these are here as an example for the Ref Genome Call today.  GAFs need to be fixed.'''
 
'''Please note these are here as an example for the Ref Genome Call today.  GAFs need to be fixed.'''
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* [[Panther ID:11014]]: CPS1 Family, done by Mike Livstone, Done July 2009
 
* [[Panther ID:11014]]: CPS1 Family, done by Mike Livstone, Done July 2009
  
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT =
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== PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT ==
  
 
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
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* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
  
= TO-DO LIST (based on monthly Reference Genome gene targets) =
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== TO-DO LIST (based on monthly Reference Genome gene targets) ==
  
 
Lung development targets
 
Lung development targets
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*[[PTHR11200]]
 
*[[PTHR11200]]
  
= DONE: incorporated into the MODs =
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== DONE: incorporated into the MODs ==
  
 
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred.
 
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred.

Revision as of 12:45, 10 November 2009

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

Please note these are here as an example for the Ref Genome Call today. GAFs need to be fixed.

PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

Families based on recent Ref Genome gene targets:

July Targets

  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.
  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred.