Difference between revisions of "Review of trees-based annotations (Retired)"

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== Families ready for or under review by MODs ==
 
== Families ready for or under review by MODs ==
  
None for now until GAF issues are corrected.
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Coming soon
  
== PENDING ==
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== Families ready for review by 2nd set of PAINT curators ==
  
'''Annotation is complete, but there is an issue with PAINT or the PAINT-generated GAF.'''
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All GAF files can be found in following directory under gocvs/:
  
* [[PANTHER10977]]: MVD Family, done by Kara
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Notes for each family can be found on the following wiki pages:
  
 
* [[Panther ID:11014]]: CPS1 Family, done by Mike Livstone, Done July 2009
 
* [[Panther ID:11014]]: CPS1 Family, done by Mike Livstone, Done July 2009
  
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
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* ACHE family :[[Panther ID:11559]], Mike Livstone.  Done August 4, 2009.
 +
 
 +
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
 +
 
 +
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
 +
 
 +
* Striatin family: [[PANTHER15653]], Mike Livstone. Completed 10/22/09.
 +
 
 +
 
 +
*[[PTHR24316]]: RDH10 family, Mike Livstone.  Completed 3/22/10.  LUNG TARGET.
 +
 
 +
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
 +
 
 +
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
 +
 
 +
== PENDING ==
  
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
 
  
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
 
  
* ACHE family :[[Panther ID:11559]], Mike Livstone.  Done August 4, 2009.
+
* [[PANTHER10977]]: MVD Family, done by Kara
  
* PSEN2 family: [[Panther ID:10202]], Mike Livstone. Done ~8/17/09.
+
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
  
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
+
* GRIN1 family : [[Panther ID:18966]], Mike Livstone. Done July 2009.
  
* Striatin family: [[PANTHER15653]], Mike Livstone. Completed 10/22/09.
+
* PSEN2 family: [[Panther ID:10202]], Mike Livstone. Done ~8/17/09.
  
 
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred. //
 
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred. //
 
** Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009
 
** Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009
 
*[[PTHR24316]]: RDH10 family, Mike Livstone.  Completed 3/22/10.  LUNG TARGET.
 
  
  
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*[[PANTHER14950]]: Mike  
 
*[[PANTHER14950]]: Mike  
 +
 
*[[PANTHER17602]]: Mike  
 
*[[PANTHER17602]]: Mike  
*[[PANTHER15653]]: Striatin family, Mike.
 
 
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
 
  
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
 
  
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

Revision as of 07:12, 25 March 2010

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

Coming soon

Families ready for review by 2nd set of PAINT curators

All GAF files can be found in following directory under gocvs/:

Notes for each family can be found on the following wiki pages:

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.


  • PTHR24316: RDH10 family, Mike Livstone. Completed 3/22/10. LUNG TARGET.
  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.

PENDING

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred. //
    • Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009


Families based on recent Ref Genome gene targets:

July Targets


  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs