Difference between revisions of "Review of trees-based annotations (Retired)"

From GO Wiki
Jump to: navigation, search
m
 
(17 intermediate revisions by 5 users not shown)
Line 1: Line 1:
 +
[[Category:PAINT Archived]]
 
This is the central site for viewing/reviewing the tree based annotations done via PAINT.
 
This is the central site for viewing/reviewing the tree based annotations done via PAINT.
  
 +
== Families ready for or under review by MODs ==
  
= Families ready for or under review by MODs =
+
Coming soon
  
*[[]]: --- family, Mike Livstone
+
== Families ready for review by 2nd set of PAINT curators ==
*[[PANTHER10977]]: MVD family, Kara
 
  
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT =
+
All GAF files can be found in following directory under gocvs/:
  
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
+
????
  
* CPS1 family : [[Panther ID:11014]], Mike Livstone.  Done July 2009.
 
  
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
+
Notes for each family can be found on the following wiki pages:
  
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
+
* CPS1 Family: [[Panther ID:11014]], done by Mike Livstone, Done July 2009
  
 
* ACHE family :[[Panther ID:11559]], Mike Livstone.  Done August 4, 2009.
 
* ACHE family :[[Panther ID:11559]], Mike Livstone.  Done August 4, 2009.
  
* PSEN2 family: [[Panther ID:10202]], Mike Livstone. Done ~8/17/09.
+
* FOXE1/Forkhead/Forkhead box family: [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
  
 
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
 
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
  
 
* Striatin family: [[PANTHER15653]], Mike Livstone. Completed 10/22/09.
 
* Striatin family: [[PANTHER15653]], Mike Livstone. Completed 10/22/09.
 +
 +
* RDH10 family: [[PTHR24316]], Mike Livstone.  Completed 3/22/10.  LUNG TARGET.
 +
 +
* LONP1, LONP2: [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009
 +
 +
* HPRT Phosphoglucomutase family: [[Panther ID:22573]], Kara Dolinski. Done July 2009
 +
 +
* MVD Family: [[PANTHER10977]], done by Kara
 +
 +
== PENDING ==
 +
 +
 +
 +
 +
 +
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 +
 +
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
 +
 +
* PSEN2 family: [[Panther ID:10202]], Mike Livstone.  Done ~8/17/09.
 +
 +
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred. //
 +
** Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009
 +
  
 
'''Families based on recent Ref Genome gene targets:'''
 
'''Families based on recent Ref Genome gene targets:'''
Line 30: Line 54:
  
 
*[[PANTHER14950]]: Mike  
 
*[[PANTHER14950]]: Mike  
 +
 
*[[PANTHER17602]]: Mike  
 
*[[PANTHER17602]]: Mike  
*[[PANTHER15653]]: Striatin family, Mike.
 
  
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
 
 
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
 
  
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009
  
= TO-DO LIST (based on monthly Reference Genome gene targets) =
+
== TO-DO LIST (based on monthly Reference Genome gene targets) ==
  
 
Lung development targets
 
Lung development targets
Line 56: Line 77:
 
*[[PTHR11200]]
 
*[[PTHR11200]]
  
= DONE: incorporated into the MODs =
+
== DONE: incorporated into the MODs ==
 
 
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred.
 

Latest revision as of 07:37, 12 April 2019

This is the central site for viewing/reviewing the tree based annotations done via PAINT.

Families ready for or under review by MODs

Coming soon

Families ready for review by 2nd set of PAINT curators

All GAF files can be found in following directory under gocvs/:

????


Notes for each family can be found on the following wiki pages:

  • FOXE1/Forkhead/Forkhead box family: Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.
  • RDH10 family: PTHR24316, Mike Livstone. Completed 3/22/10. LUNG TARGET.
  • LONP1, LONP2: Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009
  • HPRT Phosphoglucomutase family: Panther ID:22573, Kara Dolinski. Done July 2009

PENDING

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred. //
    • Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009


Families based on recent Ref Genome gene targets:

July Targets


  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs