Difference between revisions of "Review of trees-based annotations (Retired)"

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[[Category:PAINT Archived]]
 
This is the central site for viewing/reviewing the tree based annotations done via PAINT.
 
This is the central site for viewing/reviewing the tree based annotations done via PAINT.
 
  
 
== Families ready for or under review by MODs ==
 
== Families ready for or under review by MODs ==
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All GAF files can be found in following directory under gocvs/:
 
All GAF files can be found in following directory under gocvs/:
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????
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Notes for each family can be found on the following wiki pages:
 
Notes for each family can be found on the following wiki pages:
  
* [[Panther ID:11014]]: CPS1 Family, done by Mike Livstone, Done July 2009
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* CPS1 Family: [[Panther ID:11014]], done by Mike Livstone, Done July 2009
  
 
* ACHE family :[[Panther ID:11559]], Mike Livstone.  Done August 4, 2009.
 
* ACHE family :[[Panther ID:11559]], Mike Livstone.  Done August 4, 2009.
  
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
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* FOXE1/Forkhead/Forkhead box family: [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
  
 
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
 
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
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* Striatin family: [[PANTHER15653]], Mike Livstone. Completed 10/22/09.
 
* Striatin family: [[PANTHER15653]], Mike Livstone. Completed 10/22/09.
  
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* RDH10 family: [[PTHR24316]], Mike Livstone.  Completed 3/22/10.  LUNG TARGET.
  
*[[PTHR24316]]: RDH10 family, Mike Livstone. Completed 3/22/10LUNG TARGET.
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* LONP1, LONP2: [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboreeDone July 2009
  
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
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* HPRT Phosphoglucomutase family: [[Panther ID:22573]], Kara Dolinski. Done July 2009  
  
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
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* MVD Family: [[PANTHER10977]], done by Kara
  
 
== PENDING ==
 
== PENDING ==
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* [[PANTHER10977]]: MVD Family, done by Kara
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* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.

Latest revision as of 07:37, 12 April 2019

This is the central site for viewing/reviewing the tree based annotations done via PAINT.

Families ready for or under review by MODs

Coming soon

Families ready for review by 2nd set of PAINT curators

All GAF files can be found in following directory under gocvs/:

????


Notes for each family can be found on the following wiki pages:

  • FOXE1/Forkhead/Forkhead box family: Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.
  • RDH10 family: PTHR24316, Mike Livstone. Completed 3/22/10. LUNG TARGET.
  • LONP1, LONP2: Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009
  • HPRT Phosphoglucomutase family: Panther ID:22573, Kara Dolinski. Done July 2009

PENDING

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred. //
    • Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009


Families based on recent Ref Genome gene targets:

July Targets


  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs