Difference between revisions of "Review of trees-based annotations (Retired)"

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(TO-DO LIST (based on monthly Reference Genome gene targets))
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* PSEN2 family: [[Panther ID:10202]], Mike Livstone.  Done ~8/17/09.
 
* PSEN2 family: [[Panther ID:10202]], Mike Livstone.  Done ~8/17/09.
 
* RRS1 family: [[PANTHER17602]], Mike Livstone.  Completed 8/24/09.  No annotations inferred.
 
  
 
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
 
* Dicer family: [[PANTHER14950]], Mike Livstone. Completed 8/26/09.
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= DONE: incorporated into the MODs =
 
= DONE: incorporated into the MODs =
  
None currently
+
*[[PANTHER17602]]: RRS1 family, Mike Livstone.  Completed 8/24/09.  No annotations inferred.

Revision as of 10:57, 9 November 2009

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

  • [[]]: --- family, Mike Livstone
  • PANTHER10977: MVD family, Kara

PENDING: annotation is complete, but there is an issue with PAINT or the GAF, or GAFs must be re-generated with latest version of PAINT

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

Families based on recent Ref Genome gene targets:

July Targets

  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.
  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred.