Review of trees-based annotations (Retired)

This is the central site for viewing/reviewing the tree based annotations done via PAINT.

Families ready for or under review by MODs

None for now until GAF issues are corrected.

PENDING

Annotation is complete, but there is an issue with PAINT or the PAINT-generated GAF.

• PANTHER10977: MVD Family, done by Kara

• Panther ID:11014: CPS1 Family, done by Mike Livstone, Done July 2009

• MSH family : Panther ID:11361, Mike Livstone. Done July 2009.

• GRIN1 family : Panther ID:18966, Mike Livstone. Done July 2009.

• FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009

• ACHE family :Panther ID:11559, Mike Livstone. Done August 4, 2009.

• PSEN2 family: Panther ID:10202, Mike Livstone. Done ~8/17/09.

• Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.

• Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

• PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred. //
  • Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009

• PTHR24316: RDH10 family, Mike Livstone. Completed 3/22/10. LUNG TARGET.

Families based on recent Ref Genome gene targets:

July Targets

• PANTHER14950: Mike
• PANTHER17602: Mike
• PANTHER15653: Striatin family, Mike.

• LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.

• HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.

• TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

• PANTHER11544: Mike
• PANTHER10314: Kara
• PANTHER10146: Kara
• PANTHER12732
• PANTHER10010

August

• PTHR12383
• PTHR11679
• PTHR11200