Review of trees-based annotations (Retired): Difference between revisions

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= DONE =
This is the central site for viewing/reviewing the tree based annotations done via PAINT.


* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.


* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
= Families ready for or under review by MODs =


* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.


* CPS1 family : [[Panther ID:11014]], Mike Livstone.  Done July 2009.
* CPS1 family : [[Panther ID:11014]], Mike Livstone.  Done July 2009.


* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
* GRIN1 family : [[Panther ID:18966]], Mike Livstone.  Done July 2009.
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009


* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
* FOXE1/Forkhead/Forkhead box family : [[Panther ID:11829]], Kara Dolinski. Done 21-Aug-2009
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*[[PANTHER10977]]: MVD family, Kara
*[[PANTHER10977]]: MVD family, Kara
*[[PANTHER15653]]: Striatin family, Mike.
*[[PANTHER15653]]: Striatin family, Mike.
= PENDING =


None currently
= PENDING: annotation is complete, but there is an issue with PAINT or the GAF =
 
* LONP1, LONP2 : [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
 
* HPRT Phosphoglucomutase family : [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
 
* TPP1(CLN2) family : [[Panther ID:14218]], Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009


= To-do List based on monthly Reference Genome gene targets =
= TO-DO LIST (based on monthly Reference Genome gene targets) =


These are the July/August gene annotation targets.
These are the July/August gene annotation targets.
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*[[PTHR11679]]
*[[PTHR11679]]
*[[PTHR11200]]
*[[PTHR11200]]
= DONE: incorporated into the MODs =
None currently

Revision as of 13:11, 9 November 2009

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

  • FOXE1/Forkhead/Forkhead box family : Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • RRS1 family: PANTHER17602, Mike Livstone. Completed 8/24/09. No annotations inferred.
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.

Families based on recent Ref Genome gene targets:

July Targets

PENDING: annotation is complete, but there is an issue with PAINT or the GAF

  • LONP1, LONP2 : Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009, but no GAF.
  • HPRT Phosphoglucomutase family : Panther ID:22573, Kara Dolinski. Done July 2009, but no GAF.
  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

These are the July/August gene annotation targets.

July

August

DONE: incorporated into the MODs

None currently