Difference between revisions of "Review of trees-based annotations (Retired)"

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(Families ready for review by 2nd set of PAINT curators)
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* RDH10 family: [[PTHR24316]], Mike Livstone.  Completed 3/22/10.  LUNG TARGET.
 
* RDH10 family: [[PTHR24316]], Mike Livstone.  Completed 3/22/10.  LUNG TARGET.
  
* LONP1, LONP2: [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009, but no GAF.
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* LONP1, LONP2: [[Panther ID:10046]], Kara Dolinski. Feb. 2009 jamboree.  Done July 2009  
  
* HPRT Phosphoglucomutase family: [[Panther ID:22573]], Kara Dolinski. Done July 2009, but no GAF.
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* HPRT Phosphoglucomutase family: [[Panther ID:22573]], Kara Dolinski. Done July 2009  
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* [[PANTHER10977]]: MVD Family, done by Kara
  
 
== PENDING ==
 
== PENDING ==
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* [[PANTHER10977]]: MVD Family, done by Kara
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* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.
 
* MSH family : [[Panther ID:11361]], Mike Livstone. Done July 2009.

Revision as of 06:19, 25 March 2010

This is the central site for viewing/reviewing the tree based annotations done via PAINT.


Families ready for or under review by MODs

Coming soon

Families ready for review by 2nd set of PAINT curators

All GAF files can be found in following directory under gocvs/:

????


Notes for each family can be found on the following wiki pages:

  • FOXE1/Forkhead/Forkhead box family: Panther ID:11829, Kara Dolinski. Done 21-Aug-2009
  • Dicer family: PANTHER14950, Mike Livstone. Completed 8/26/09.
  • Striatin family: PANTHER15653, Mike Livstone. Completed 10/22/09.
  • RDH10 family: PTHR24316, Mike Livstone. Completed 3/22/10. LUNG TARGET.
  • LONP1, LONP2: Panther ID:10046, Kara Dolinski. Feb. 2009 jamboree. Done July 2009
  • HPRT Phosphoglucomutase family: Panther ID:22573, Kara Dolinski. Done July 2009

PENDING

  • PANTHER17602: RRS1 family, Mike Livstone. Completed 8/24/09. No annotations inferred. //
    • Modification: can annotate to nucleolus based on pombe, human annotations. Pascale Gaudet 12/15/2009


Families based on recent Ref Genome gene targets:

July Targets


  • TPP1(CLN2) family : Panther ID:14218, Pascale Gaudet. Done for now (no GAF file- can only propagate in mammals) PG 14-Jul-2009

TO-DO LIST (based on monthly Reference Genome gene targets)

Lung development targets (coming soon)

July

August

DONE: incorporated into the MODs