SWUG:Meeting 2010 09 28: Difference between revisions

From GO Wiki
Jump to navigation Jump to search
No edit summary
No edit summary
Line 9: Line 9:


* [[AmiGO_1_8]] Release
* [[AmiGO_1_8]] Release
** Estimated release time
** Release Schedule for [[AmiGO_1_9]]
* [[Production_and_GO_Admin#Switch to load-qfo-seqs.pl]]
* [[Production_and_GO_Admin#Switch to load-qfo-seqs.pl]]
** Existing sequence loading is slow and memory intensive
** New script depends on QFO fasta files provided by EBI
** ~60 genomes, subsumes RefG set
** also takes care of ID mapping / gp2protein
** Current issues:
*** latest dump excludes DB prefixes
* [[Software_Group_2010_Future_Plans]] - any questions arising from presentation at GO meeting
* [[Software_Group_2010_Future_Plans]] - any questions arising from presentation at GO meeting
** increased emphasis on reuse
** [[Transitiob to OWL]]
* [[Schema_Overhaul]]
* [[Schema_Overhaul]]
** ARRA Funding
** Berkeley - one hire 1 yr, starting October. Stanford: ?
** Proposed: Berkeley hire will focus on ontology related db elements, Stanford hire on annotations
** New architecture: java, use of OWLAPI for ontologies
** Dual db strategy: "gold", "lead" - bulk loading, less normalized schema, optimized for db loading and queries
** Exploration of non-relational technology: SOLR, triplestores, QuickGO indexes

Revision as of 02:37, 29 September 2010

Conference call details: New GOC conference call numbers: 

US: 1 866 953 9688
Outside US: UK 0808 238 6001
pin: 801561


Topics

  • AmiGO_1_8 Release
    • Estimated release time
    • Release Schedule for AmiGO_1_9
  • Production_and_GO_Admin#Switch to load-qfo-seqs.pl
    • Existing sequence loading is slow and memory intensive
    • New script depends on QFO fasta files provided by EBI
    • ~60 genomes, subsumes RefG set
    • also takes care of ID mapping / gp2protein
    • Current issues:
      • latest dump excludes DB prefixes
  • Software_Group_2010_Future_Plans - any questions arising from presentation at GO meeting
  • Schema_Overhaul
    • ARRA Funding
    • Berkeley - one hire 1 yr, starting October. Stanford: ?
    • Proposed: Berkeley hire will focus on ontology related db elements, Stanford hire on annotations
    • New architecture: java, use of OWLAPI for ontologies
    • Dual db strategy: "gold", "lead" - bulk loading, less normalized schema, optimized for db loading and queries
    • Exploration of non-relational technology: SOLR, triplestores, QuickGO indexes
Retrieved from "https://wiki.geneontology.org/index.php?title=SWUG:Meeting_2010_09_28&oldid=31338"