SWUG:Report 200907
Projects
Compositional Term Submission Tool
- beta version - Released
- Curator testing - In progress
A subset of editors are using the beta interface at [[1]] and about 40 regulation terms have been automatically added to the ontology
OBO-Edit MIREOT support
- beta with isa closure support - released, but a number of bugs need to be fixed before release
Full Text Indexing
- Evaulate Solr - DONE
- Install Solr labs on labs - DONE
Solr indexing will be used to provide fast textual queries and form autocompletion in AmiGO and across our web interfaces
Relation Filtering in AmiGO
- Database reasoner DONE
RefGenome Reports
- load gp2pthr family info - DONE
- basic HTML reports in Labs - DONE
IndiGO Annotation Editor
- Evaluation of protein2go architecture DONE
The p2go architecture looks suitable for extension and generalization for use as GO-wide annotation tool. We will have to define APIs that different databases can implement
GO Galaxy Environment
- alpha on labs DONE - http://yuri.lbl.gov
Taxon Constraint Engine
- v1 running weekly DONE
available here in GO cvs:
go/quality_control/annotation_checks/taxon_checks/
Function to Process Inference Engine
v1 running weekly DONE
http://www.geneontology.org/scratch/gaf-inference/
Additional Expressivity in GO Annotations
GAF2 publishing DONE
Annotation Rule Engine
Collect rules on wiki DONE
Incremental Database Loading
- benchmarks - TODO
Advanced AmiGO Displays
N-matrix alpha on labs DONE
OBO Edit Development
2.1 beta cycle in progress
AmiGO Development
- 1_8 labs - DONE
- 1_8 percolation to production - IN PROGRESS