SWUG:Report 200907

Projects

Compositional Term Submission Tool

• beta version - Released
• Curator testing - In progress

A subset of editors are using the beta interface at [[1]] and about 40 regulation terms have been automatically added to the ontology

OBO-Edit MIREOT support

• beta with isa closure support - released, but a number of bugs need to be fixed before release

Full Text Indexing

• Evaulate Solr - DONE
• Install Solr labs on labs - DONE

Solr indexing will be used to provide fast textual queries and form autocompletion in AmiGO and across our web interfaces

Relation Filtering in AmiGO

• Database reasoner DONE

RefGenome Reports

• load gp2pthr family info - DONE
• basic HTML reports in Labs - DONE

IndiGO Annotation Editor

• Evaluation of protein2go architecture DONE

The p2go architecture looks suitable for extension and generalization for use as GO-wide annotation tool. We will have to define APIs that different databases can implement

GO Galaxy Environment

• alpha on labs DONE - http://yuri.lbl.gov

Taxon Constraint Engine

• v1 running weekly DONE

available here in GO cvs:

go/quality_control/annotation_checks/taxon_checks/

Function to Process Inference Engine

v1 running weekly DONE

http://www.geneontology.org/scratch/gaf-inference/

Additional Expressivity in GO Annotations

GAF2 publishing DONE

Annotation Rule Engine

Collect rules on wiki DONE

Incremental Database Loading

1. benchmarks - TODO

Advanced AmiGO Displays

N-matrix alpha on labs DONE

OBO Edit Development

2.1 beta cycle in progress

AmiGO Development

• 1_8 labs - DONE
• 1_8 percolation to production - IN PROGRESS