SWUG:Report 201003: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
| Line 8: | Line 8: | ||
== OBO-Edit == | == OBO-Edit == | ||
* OE2.0 release | * OE2.0 release | ||
* 2.1betas1-3 | * 2.1betas1-3 | ||
* Support for MIREOTing/isa-closure | * Support for MIREOTing/isa-closure | ||
* Improved obo-owl roundtripping | * Improved obo-owl roundtripping | ||
* Latest Updates: #* Updates: [[OBO-Edit: v2.1 Release Notes]] | |||
==Software Libraries== | ==Software Libraries== | ||
Revision as of 19:08, 29 March 2010
AmiGO and GO Database
- New reference genome family-based status reporting
- Loading of panther families
- Refactoring of how xrefs are handled in database
- Database extended to handle col 16 Annotation_Cross_Products
- Database uses reasoner code for populating graph_path table
OBO-Edit
- OE2.0 release
- 2.1betas1-3
- Support for MIREOTing/isa-closure
- Improved obo-owl roundtripping
- Latest Updates: #* Updates: OBO-Edit: v2.1 Release Notes
Software Libraries
Continuing development of go-moose, the object oriented perl library which will replace go-perl and go-db-perl. Includes a reasoner implementation and numerous useful ontology- and annotation-related scripts.
PAINT
Production and Infrastructure
- Database build pipeline streamlining Media:go-infrastructure.ppt
Ontology and Annotation Support
Quality Control
- implemented Ontology Publishing Pipeline - checks for errors before publishing of ontology from editors version
- Taxon constraints pipeline
- GAF Inference from MF->BP
Reactome
- Using cross-products to automate Reactome-GO links