SWUG:Report 201003

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Revision as of 19:08, 29 March 2010 by Amina (talk | contribs)
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AmiGO and GO Database

  • New reference genome family-based status reporting
  • Loading of panther families
  • Refactoring of how xrefs are handled in database
  • Database extended to handle col 16 Annotation_Cross_Products
  • Database uses reasoner code for populating graph_path table

OBO-Edit

  • OE2.0 release
  • 2.1betas1-3
  • Support for MIREOTing/isa-closure
  • Improved obo-owl roundtripping
  • Latest Updates: #* Updates: OBO-Edit: v2.1 Release Notes

Software Libraries

Continuing development of go-moose, the object oriented perl library which will replace go-perl and go-db-perl. Includes a reasoner implementation and numerous useful ontology- and annotation-related scripts.

PAINT

Production and Infrastructure

Ontology and Annotation Support

Quality Control

  • implemented Ontology Publishing Pipeline - checks for errors before publishing of ontology from editors version
  • Taxon constraints pipeline
  • GAF Inference from MF->BP

Reactome

  • Using cross-products to automate Reactome-GO links