Sep2009 ontology report: Difference between revisions

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Ontology Development & GO Editorial Office Report - August 2009
Ontology Development & GO Editorial Office Report - September 2009


===I. Ontology Development===
===I. Ontology Development===
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*Content items in progress
*Content items in progress
**Additions from heart development content meeting held at UCL September 22, 2009 (David, Varsha, Doug, et al.)
**Additions from [[Heart_Development_workshop|heart development content meeting]] held at UCL September 22, 2009 (David, Varsha, Doug, et al.)
**The [[CJM_EBI_Visit_June_2009#Status_overview_and_release_plan|plan to add internal cross-products]] to the go_write (and therefore also go_ext) file is in progress.
**The [[CJM_EBI_Visit_June_2009#Status_overview_and_release_plan|plan to add internal cross-products]] to the go_write (and therefore also go_ext) file is in progress.
**Work continues on terms for [[Kidney_Development|kidney development]]
**Work continues on terms for [[Kidney_Development|kidney development]]
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**Also continuing
**Also continuing
***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products
***Additional progress on [[Cellular_component_processes|Cellular component organization and biogenesis]], in light of internal cross-products
***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; currently moving "sensu" information from synonyms to definitions (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009]] and [[Taxon-GO_Implementation_August_28th_2009_onwards]] for latest)
***[[Taxon-GO_Implementation_April_2009_onwards#1st_June|Taxon triggers]]; finished moving "sensu" information from synonyms to definitions. Now resolving the inconsistencies found using the rules and Chris's script (see [[Taxon-GO_Implementation_April_2009_onwards#5th_August_2009]] and [[Taxon-GO_Implementation_August_28th_2009_onwards]] for latest)
***Work on branching organ development (David)  
***Work on branching organ development (David)  
**Quality control continues as usual - reports generated by Chris
**Quality control continues as usual - reports generated by Chris
***Regulation - also see above (David, Tanya)
***Reasoner-based implied links for new regulation terms - also see above (David, Tanya)
***Multiple part_of parents (several GO curators, especially Tanya & David)
***Multiple part_of parents (several GO curators, especially Tanya & David)
***Abduced links (David, Tanya)
***Problematic regulates terms (David, Tanya)
**Various SourceForge items
**Various SourceForge items


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**Heart development content meeting (see above)
**Heart development content meeting (see above)
**[[Cambridge GO Consortium Meeting | Cambridge Combined GO Consortium and SAB Meeting]] Jesus College, Cambridge, UK, September 23-25, 2009 - also see [[GOC Meeting Minutes September 2009]]
**[[Cambridge GO Consortium Meeting | Cambridge Combined GO Consortium and SAB Meeting]] Jesus College, Cambridge, UK, September 23-25, 2009 - also see [[GOC Meeting Minutes September 2009]]


===II. GO Editorial Office activities not represented in part I===
===II. GO Editorial Office activities not represented in part I===

Latest revision as of 10:26, 30 November 2009

Ontology Development & GO Editorial Office Report - September 2009

I. Ontology Development

  • SourceForge
    • Items opened: 110
    • Items closed: 102
    • Items still open: 271
      • assigned: 209
      • unassigned: 62
  • Content items resolved
    • Improvements to RNA interference and related terms
    • Several SourceForge items resolved, including some handled at GO meeting "clinic" session

II. GO Editorial Office activities not represented in part I

  • OBO-Edit working group:
    • Continued testing of OBO-Edit 2.1 beta
    • See meeting minutes from September 3, 15 and 24, and monthly report
  • Advocacy/outreach (Jane, Jen)
    • Cambridge Clinical Neuroscience and Mental Health Symposium, 29th - 30th September 2009 (Jen - poster)
    • See monthly report
  • Anything else
    • GO bibliography has 2829 entries

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