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| | + | [[Category:Signaling]] |
| | Return to [[Main_Page|GOC Main Page]] | | Return to [[Main_Page|GOC Main Page]] |
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| | Return to Signaling Main Page [[http://wiki.geneontology.org/index.php/Signaling]] | | Return to Signaling Main Page [[http://wiki.geneontology.org/index.php/Signaling]] |
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| − | Please suggest agenda items, relevant papers and other information relating to signaling GO terms that you would like discussed at this workshop.
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| − | ----
| + | PLEASE SEE THE REVISED PAGE AT: |
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| − | | + | http://gocwiki.geneontology.org/index.php/Signaling_Workshop_February_2011 |
| − | == Participants ==
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| − | | |
| − | {| class="wikitable" border="1"
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| − | |-
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| − | ! GO Annotators
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| − | ! Remote Participants
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| − | ! GO Editors
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| − | ! Signaling Experts
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| − | |-
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| − | | Dr Ruth Lovering (BHF-UCL)<br/>Dr Varsha Khodiyar (BHF-UCL)<br/>Dr Sandra Orchard (Intact)<br/>Dr Peter D'Eustachio (Reactome) <br/>Dr Rachael Huntley(GOA) <br/>Dr Val Wood (PombeBase)<br/>Dr Alex Diehl (MGI) (TBC)
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| − | | Dr Alex Diehl<br/> (MGI/UB Medical School; GO curator and editor<br/> and Cell ontology editor)
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| − | | Dr Rebecca Foulger (GO Editorial)<br/>Dr Midori Harris (GO Editorial)
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| − | | Dr Andrea Townsend-Nicholson (UCL)<br/>Dr Andrew Winter (Univeristy Edinburgh)<br/>Dr Andrew Chatr-aryamontri (University Edinburgh)
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| − | |}
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| − | | |
| − | == Where and When ==
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| − | Date: Wednesday 16th February and Thursday 17th February, 2011.
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| − | Where: EMBL-EBI.
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| − | Wednesday: A2-33
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| − | Thursday: Courtyard room
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| − | * Travel instructions to the EBI, The Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SD [http://www.ebi.ac.uk/Information/Travel/travel.html]
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| − | * Please let EBI reception know you have arrived, and Rebecca will come and meet you.
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| − | == Programme ==
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| − | Wednesday 16th February
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| − | {| border="1" cellpadding="2" width=1000px
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| − | |width="5%"|'''9:15am'''
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| − | |width="90%"|Tea and Coffee
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| − | |'''9:30am'''
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| − | | Welcome and introduction
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| − | |Rebecca
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| − | |'''9:35am'''
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| − | |Introduction to GO
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| − | |Rebecca
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| − | |'''9:50am'''
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| − | |'''11am'''
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| − | |Coffee break
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| − | |'''11:45am'''
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| − | |'''12:30pm'''
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| − | |Lunch @ on-site campus restaurant
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| − | |'''2pm'''
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| − | |'''3:00 pm'''
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| − | |Coffee break
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| − | |'''5pm'''
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| − | |Close
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| − | |}
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| − | Thursday 17th February
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| − | {| border="1" cellpadding="2" width=1000px
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| − | |-valign="top"
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| − | |width="5%"|'''9:15am'''
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| − | |width="90%"|Tea and Coffee
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| − | |width="5%"|
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| − | |-valign="top"
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| − | |'''9:30am'''
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| − | | Recap of decisions made on Day 1.
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| − | |Rebecca
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| − | |'''10am'''
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| − | |-valign="top"
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| − | |'''11am'''
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| − | |Coffee break
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| − | |-valign="top"
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| − | |-valign="top"
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| − | |'''12:30pm'''
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| − | |Lunch @ on-site campus restaurant
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| − | |-valign="top"
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| − | |'''3:00 pm'''
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| − | |Close
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| − | |}
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| − | == Relevant papers and other resources ==
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| − | Biochemistry of Signal Tranduction and Regulation. Gerhard Krauss. ISBN:3-527-29241-1
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| − | Cell Signaliing. John T. Hancock. ISBN:0199264678
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| − | The Biochemistry of Cell Signalling. Ernst J. M. Helmreich. ISBN: 0198508204
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| − | Signal Transduction. Gompert et al. ISBN: 9787030182173. (recommended by Andrea: provides a history on signal transduction)
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| − | == Topics ==
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| − | *<font color="blue">How the signaling node should be split</font color>
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| − | **cellular vs tissue vs organismal?
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| − | **pathway vs process?
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| − | *<font color="purple">Defining and placing:</font color>
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| − | **signal transduction
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| − | **signal transmission
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| − | **signaling pathway
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| − | *<font color="green">Connecting the networks</font color>
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| − | **How to connect the cell surface receptors with the intracellular 'modules' they signal through
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| − | *<font color="red">Dealing with ligand-receptor signaling that is not 1:1</font color>
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| − | *<font color="magenta">What is a signal transducer?</font color>
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| − | **adaptor proteins?
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| − | **receptors?
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| − | **ligands?
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| − | *<font color="burgundy">Should ligand-gated ion channels be given receptor parents?</font color>
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| − | == SourceForge Signaling Items ==
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| − | receptors and HAS_PART: http://sourceforge.net/tracker/?func=detail&aid=3103037&group_id=36855&atid=440764
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| − | receptor signaling proteins: http://sourceforge.net/tracker/?func=detail&aid=3101487&group_id=36855&atid=440764
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| − | purigenic receptors: http://sourceforge.net/tracker/?func=detail&aid=3088079&group_id=36855&atid=440764
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| − | MAPKKK cascade: http://sourceforge.net/tracker/?func=detail&aid=3085150&group_id=36855&atid=440764
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| − | Calcium-mediated signaling; http://sourceforge.net/tracker/?func=detail&aid=3077377&group_id=36855&atid=440764
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| − | morphogen: http://sourceforge.net/tracker/?func=detail&aid=3026415&group_id=36855&atid=440764
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| − | norrin signaling (example of non 1:1 receptor:ligand signaling) : http://sourceforge.net/tracker/?func=detail&aid=3041964&group_id=36855&atid=440764
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| − | hormone and hormone receptor signaling: http://sourceforge.net/tracker/?func=detail&aid=2974691&group_id=36855&atid=440764
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| − | Connecting up receptors and intracellular modules:
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| − | wnt signaling via hippo cascade: http://sourceforge.net/tracker/?func=detail&aid=3032564&group_id=36855&atid=440764
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| − | wnt signaling via JNK cascade: http://sourceforge.net/tracker/?func=detail&aid=3023417&group_id=36855&atid=440764
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| − | PI3K/AKT signaling: http://sourceforge.net/tracker/?func=detail&aid=3008502&group_id=36855&atid=440764
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| − | == Minutes ==
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| − | == Notes ==
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| − | Definition Adjustments:
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| − | Obsoleted Terms:
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| − | Moved Terms:
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| − | New Terms:
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