Signalling Workshop Agenda: Difference between revisions
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== General Outline for Presentations == | == General Outline for Presentations == | ||
*Note that the | *Note that the different signaling topics are at various stages of analysis, so not all groups will be expected to report on each of these aspects of their work. However, we'd like to have an overall similar structure to the presentations, so please follow this outline as much as you can. | ||
**Summary of analysis | **Summary of analysis | ||
**Proposed changes to annotations | **Proposed changes to annotations |
Revision as of 11:28, 21 September 2017
Signaling Workshop Agenda
Chairs
- Ruth (UCL) will chair the morning session; Kimberly (WB) will chair the afternoon session
Meeting Schedule
Time | Item | Minutes |
---|---|---|
9:00am - 9:15am | Opening Remarks - Ruth (UCl) | Val (PomBase) |
9:20am - 9:45am | Summary of Approach to Analysis and Project Organization - David H. (MGI) and Kimberly (WB) | Val (PomBase) |
9:50am - 10:50am | Canonical Wnt Signaling - Helen (FB) and Kimberly (WB) | Val (PomBase) |
11:00am - 11:30am | BREAK | na |
11:30am - 12:30pm | MAPK Signaling - David H. (MGI) and Sabrina (ZFIN) | |
12:30pm - 1:30pm | LUNCH | na |
1:30pm - 2:30pm | GPCR Signaling - Pascale (SIB) and Petra (dictyBase) | |
2:30pm - 3:00pm | JAK/STAT Signaling - Giulia (FB) and Ruth (UCL) | |
3:00pm - 3:30pm | Ca2+ Signaling involved in Mammalian Fertilization - Penelope (UniProt) | |
3:30pm - 4:00pm | BREAK | na |
4:00pm - 5:00pm | Discussion |
General Outline for Presentations
- Note that the different signaling topics are at various stages of analysis, so not all groups will be expected to report on each of these aspects of their work. However, we'd like to have an overall similar structure to the presentations, so please follow this outline as much as you can.
- Summary of analysis
- Proposed changes to annotations
- Proposed changes to ontology
- Outstanding issues
- GO-CAM model
Minutes
Proposed topics for discussion (suggested prior to meeting; please see table above for actual topics and schedule)
Proposer (and group) | Signaling pathway | Reference | What this pathway offers | link to uploaded figures and noctua model |
---|---|---|---|---|
Judy (MGI) | General information | [http://www.cellsignallingbiology.org/csb/002/002.pdf cell signaling pathways | useful overview of lots of different types of pathways | |
Val (PomBase) | TOR signalling | |||
Ruth (UCL) | Gastrin signaling | PMID:26205660 | Multiple intracellular signaling pathways converge to regulate transcription (see Fig 2) Fig2B nicely groups different 'parts' of the pathway. Also brings to discussion annotation of entities responsible for release of the ligand. | impossible to get this modelled in GO-CAM before October |
Ruth (UCL) | Apoptosis | Apoptosis working group | this has already been worked on in GO and guidelines established, need to consider aligning to these | Apoptosis curation manual |