Signalling Workshop Agenda: Difference between revisions
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! Reference | ! Reference | ||
! What this pathway offers | ! What this pathway offers | ||
! link to uploaded figures | ! link to uploaded figures and noctua model | ||
|- | |- | ||
| | | Judy (MGI) | ||
| | | General information | ||
| | | [http://www.cellsignallingbiology.org/csb/002/002.pdf cell signaling pathways | ||
| | | useful overview of lots of different types of pathways | ||
| | | | ||
|- | |- | ||
| | | Val (PomBase) | ||
| | | TOR signalling | ||
| | | | ||
| | | | ||
| | | | ||
|- | |- | ||
| | | Ruth | ||
| | | Gastrin signaling | ||
| | | [https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4513977/ PMID:26205660] | ||
| | | Multiple intracellular signaling pathways converge to regulate transcription (see Fig 2) Fig2B nicely groups different 'parts' of the pathway. Also brings to discussion annotation of entities responsible for release of the ligand. | ||
| | | impossible to get this modelled in GO-CAM before October | ||
|- | |- | ||
| | | Ruth | ||
| | | Apoptosis | ||
| | | [http://wiki.geneontology.org/index.php/Apoptosis Apoptosis working group] | ||
| | | this has already been worked on in GO and guidelines established, need to consider aligning to these | ||
| | | [http://wiki.geneontology.org/index.php/Apoptosis_Curation_Manual Apoptosis curation manual] | ||
|- | |- | ||
| | | | ||
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|} | |} | ||
==Other databases with signalling pathways== | |||
[http://reactome.org/ Reactome] | |||
[http://signor.uniroma2.it SIGNOR] [https://www.ncbi.nlm.nih.gov/pubmed/26467481 SIGNOR paper] | |||
==Additional Notes== | ==Additional Notes== |
Revision as of 06:07, 28 June 2017
[Back to Signalling Workshop page]
Time | Item |
---|---|
9am to 11am | |
11am to 11:30 am | Break |
11:30am to 1pm | |
1pm to 2pm | Lunch |
2pm to 3:30pm | |
3:30pm to 3:30pm | Break |
3:30pm to 5:00pm |
Proposed topics for discussion
Proposer (and group) | Signaling pathway | Reference | What this pathway offers | link to uploaded figures and noctua model |
---|---|---|---|---|
Judy (MGI) | General information | [http://www.cellsignallingbiology.org/csb/002/002.pdf cell signaling pathways | useful overview of lots of different types of pathways | |
Val (PomBase) | TOR signalling | |||
Ruth | Gastrin signaling | PMID:26205660 | Multiple intracellular signaling pathways converge to regulate transcription (see Fig 2) Fig2B nicely groups different 'parts' of the pathway. Also brings to discussion annotation of entities responsible for release of the ligand. | impossible to get this modelled in GO-CAM before October |
Ruth | Apoptosis | Apoptosis working group | this has already been worked on in GO and guidelines established, need to consider aligning to these | Apoptosis curation manual |