Software Group Progress Report Q2 2014: Difference between revisions
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=== Noctua === | === Noctua === | ||
* Implemented Prototype system, 3 components | |||
** Noctua: client component | |||
** Barista: middleware layer | |||
** Minerva: OWLServer | |||
* CalTech hackathon, discussed integration between Capella (text span annotation tool) and Noctua [https://github.com/kltm/go-mme/issues/51 noctua-51] | * CalTech hackathon, discussed integration between Capella (text span annotation tool) and Noctua [https://github.com/kltm/go-mme/issues/51 noctua-51] | ||
* Implemented LEGO->GPAD in OWLTools [https://www.ebi.ac.uk/panda/jira/browse/GO-288 JIRA GO-288] | * Implemented LEGO->GPAD in OWLTools [https://www.ebi.ac.uk/panda/jira/browse/GO-288 JIRA GO-288] | ||
Revision as of 18:28, 5 June 2014
Progress Report Q2
Website
- Drupal
- Drupal Content: migration complete (Moni, Seth, Rama, ...)
- Drupal Rollout: migrated to amazon, still testing (Seth, Stuart) JIRA GO-106
- AmiGO
- AmiGO 2.0 released in March (Seth)
- AmiGO 2.1 in testing May (Seth, Rama)
Authentication / Auth
- Gathering requirements at CalTech hackathon
- Implementing persona integration in Noctua
- Authentication YAML for Noctua specified
Noctua
- Implemented Prototype system, 3 components
- Noctua: client component
- Barista: middleware layer
- Minerva: OWLServer
- CalTech hackathon, discussed integration between Capella (text span annotation tool) and Noctua noctua-51
- Implemented LEGO->GPAD in OWLTools JIRA GO-288
Transition to OWL
Top-level ticket: GO-222
- Berkeley OWL hackathon (with David and Tanya): gathered requirements, tested roundtripping, reasoning etc
- Added import catalogs to OE (this allowed us to add all logical defs to main ontology)
- oboeditor plugin for Protege v0.1 (Heiko, Simon J)
- Fixes to obo/owl converter for never_in_taxon links
GPAD/GPI
- GPAD 1.1 spec (Tony, Heiko, Chris, DavidOS)
- Added 2-way converters to OWLTools (Heiko)
- GPI exports direct from MGI (Mary)
Retire GO Mine
- Done? (SETH/KALPANA)
Priorities for Q3
WebSite
- Drupal and AmiGO 2 client running in cloud?
- AmiGO AmiGO_2#Timeline
- Selenium test framework (Mary)
- AmiGO 2.2 July
- AmiGO 2.3 Oct
Noctua
Top-level ticket: GO-255
- SETH TO ADD
- import from Reactome (Chris)
- Dev instance up and running at CalTech (JuanCarlos, Raymond)
Paper Viewer
- Capella-Noctua integration noctua-51 pushed to Q4
Infrastructure
- Migrate MGI GAF->GPAD scripts to OWLTools (Mary)
- Refactor Golr loading (Seth, Heiko, Chris)
- Migrate crons to Jenkins JIRA GO-99
MySQL retirement
- Replace go-db-perl code with owltools code (Kalpana) JIRA GO-282
Transition to OWL
- oboeditor plugin v0.2
- prototype of solution for caching inferred links (Heiko, DavidOS)
- Progress towards automation of integration with RHEA GO-190 -- not enough resources to complete in Q3
- Progress towards automation of integration with IPR/PFAM -- not enough resources to complete in Q3