Software Group Progress Report Q2 2014: Difference between revisions
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=== Retire GO Mine === | === Retire GO Mine === | ||
* Done? (SETH/KALPANA) | * Done? (SETH/KALPANA) | ||
=== PAINT === | |||
* Paint v1.0 release (Suzi) | |||
* JsPAINT prototype (Mitch, Seth) | |||
== Priorities for Q3 == | == Priorities for Q3 == |
Revision as of 18:37, 5 June 2014
Progress Report Q2
Website
- Drupal
- Drupal Content: migration complete (Moni, Seth, Rama, ...)
- Drupal Rollout: migrated to amazon, still testing (Seth, Stuart) JIRA GO-106
- AmiGO
- AmiGO 2.0 released in March (Seth)
- AmiGO 2.1 in testing May (Seth, Rama)
- Term Enrichment
- Panther services integrated (Anushya, Seth)
Authentication / Auth
- Gathering requirements at CalTech hackathon
- Implementing persona integration in Noctua
Noctua
- Implemented Prototype system, 3 components
- Noctua: client component
- Barista: middleware layer
- Minerva: OWLServer
- CalTech hackathon, discussed integration between Capella (text span annotation tool) and Noctua noctua-51
- Implemented v1 of LEGO->GPAD/GAF in OWLTools JIRA GO-288
Transition to OWL
Top-level ticket: GO-222
- Berkeley OWL hackathon (with David and Tanya): gathered requirements, tested roundtripping, reasoning etc
- Added import catalogs to OE (this allowed us to add all logical defs to main ontology)
- oboeditor plugin for Protege v0.1 (Heiko, Simon J)
- Fixes to obo/owl converter for never_in_taxon links
GPAD/GPI
- GPAD 1.1 spec (Tony, Heiko, Chris, DavidOS)
- Added 2-way converters to OWLTools (Heiko)
- GPI exports direct from MGI (Mary)
Retire GO Mine
- Done? (SETH/KALPANA)
PAINT
- Paint v1.0 release (Suzi)
- JsPAINT prototype (Mitch, Seth)
Priorities for Q3
WebSite
- Drupal and AmiGO 2 client running in cloud?
- AmiGO AmiGO_2#Timeline
- Selenium test framework (Mary, JuanCarlos)
- AmiGO 2.2 July
- AmiGO 2.3 Oct
Noctua
Top-level ticket: GO-255
- SETH TO ADD
- import from Reactome (Chris)
- Dev instance up and running at CalTech (JuanCarlos, Raymond)
- OA-type editor in Noctua
- Pipeline for GAF/GPAD output
Paper Viewer
- Capella-Noctua integration noctua-51 pushed to Q4
Infrastructure
- Migrate MGI GAF->GPAD scripts to OWLTools (Mary)
- Refactor Golr loading (Seth, Heiko, Chris)
- Migrate crons to Jenkins JIRA GO-99
MySQL retirement
- Replace go-db-perl code with owltools code (Kalpana) JIRA GO-282
Transition to OWL
- oboeditor plugin v0.2
- prototype of solution for caching inferred links (Heiko, DavidOS)
- Progress towards automation of integration with RHEA GO-190 -- not enough resources to complete in Q3
- Progress towards automation of integration with IPR/PFAM -- not enough resources to complete in Q3