Software Group progress report for 2010: Difference between revisions

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* Created a timeline [[SWUG_Timeline_2010-2011]]
* Created a timeline [[SWUG_Timeline_2010-2011]]


== Database ==
== Annotation Support ==
 
=== Database ===
 
=== AmiGO ===
 
SETH TO FILL IN
 
* [[Full_Text_Indexing]]
 
 
=== Workflow Support ===
 
* Created a basic [[GO_Galaxy_Environment]]
** integrated map2slim
** integrated slim-creator
** integrated enrichment tools
*** GO TermFinder
*** Ontologizer


== Reference Genome Support ==
== Reference Genome Support ==
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SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages
SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages


SETH TO FILL IN - js phylo views, existing refg pages
SETH TO FILL IN - js phylo views, existing refg pages [[AmiGO_Phylotrees]]


== AmiGO ==


SETH TO FILL IN
== Ontology Support ==
 
=== TermGenie ==


== Analysis Support ==
See [[Compositional_Term_Submission_Tool]]


==
* Created initial prototype, in use by ontology group and annotators


== OBO-Edit ==
=== OBO-Edit ===


See  
See  
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AMINA TO FILL IN
AMINA TO FILL IN


== Transition to OWL ==
=== Transition to OWL ===


See [[Transition_to_OWL]]
See [[Transition_to_OWL]]

Revision as of 15:34, 16 November 2010

Management

Annotation Support

Database

AmiGO

SETH TO FILL IN


Workflow Support

  • Created a basic GO_Galaxy_Environment
    • integrated map2slim
    • integrated slim-creator
    • integrated enrichment tools
      • GO TermFinder
      • Ontologizer

Reference Genome Support

SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages

SETH TO FILL IN - js phylo views, existing refg pages AmiGO_Phylotrees


Ontology Support

= TermGenie

See Compositional_Term_Submission_Tool

  • Created initial prototype, in use by ontology group and annotators

OBO-Edit

See

AMINA TO FILL IN

Transition to OWL

See Transition_to_OWL