Software Group progress report for 2010: Difference between revisions
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* Created a timeline [[SWUG_Timeline_2010-2011]] | * Created a timeline [[SWUG_Timeline_2010-2011]] | ||
== Database == | == Annotation Support == | ||
=== Database === | |||
=== AmiGO === | |||
SETH TO FILL IN | |||
* [[Full_Text_Indexing]] | |||
=== Workflow Support === | |||
* Created a basic [[GO_Galaxy_Environment]] | |||
** integrated map2slim | |||
** integrated slim-creator | |||
** integrated enrichment tools | |||
*** GO TermFinder | |||
*** Ontologizer | |||
== Reference Genome Support == | == Reference Genome Support == | ||
Line 9: | Line 27: | ||
SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages | SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages | ||
SETH TO FILL IN - js phylo views, existing refg pages | SETH TO FILL IN - js phylo views, existing refg pages [[AmiGO_Phylotrees]] | ||
== Ontology Support == | |||
=== TermGenie == | |||
See [[Compositional_Term_Submission_Tool]] | |||
* Created initial prototype, in use by ontology group and annotators | |||
== OBO-Edit == | === OBO-Edit === | ||
See | See | ||
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AMINA TO FILL IN | AMINA TO FILL IN | ||
== Transition to OWL == | === Transition to OWL === | ||
See [[Transition_to_OWL]] | See [[Transition_to_OWL]] |
Revision as of 15:34, 16 November 2010
Management
- Created a timeline SWUG_Timeline_2010-2011
Annotation Support
Database
AmiGO
SETH TO FILL IN
Workflow Support
- Created a basic GO_Galaxy_Environment
- integrated map2slim
- integrated slim-creator
- integrated enrichment tools
- GO TermFinder
- Ontologizer
Reference Genome Support
SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages
SETH TO FILL IN - js phylo views, existing refg pages AmiGO_Phylotrees
Ontology Support
= TermGenie
See Compositional_Term_Submission_Tool
- Created initial prototype, in use by ontology group and annotators
OBO-Edit
See
AMINA TO FILL IN
Transition to OWL
- Initiated plan for ontology support in next cycle Software_Group_2010_Future_Plans#Plan
- first draft of obof1.4 guide http://www.geneontology.org/GO.format.obo-1_4.shtml
- formal spec of obo syntax and owl mapping: http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html
- rewritten parser and obo2owl converter, 100% java http://code.google.com/p/oboformat/