Software Group progress report for 2010: Difference between revisions
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SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages | SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages | ||
* js phylo views: work in progress on dev machine (nothing public yet) [[AmiGO_Phylotrees]] | * js phylo views: work in progress on dev machine (nothing public yet). See: [[AmiGO_Phylotrees]]. | ||
* existing refg pages: to be dropped--no further work | * existing refg pages: to be dropped--no further work | ||
* [[AmiGO_and_QuickGO_Integration]] SETH/TONY | * [[AmiGO_and_QuickGO_Integration]] SETH/TONY | ||
Revision as of 16:00, 16 November 2010
Management
- Created a timeline SWUG_Timeline_2010-2011
Annotation Support
Database
Production
BEN TO FILL IN
Schema Overhaul
SHAHID TO FILL IN
(this may belong in a separate report - add here for now anyway)
Annotation QC
- v1 of [[Taxon_Constraint_Check_Engine] in production. v2 (java rewrite) in progress
- Function_to_Process_Inference_Engine in production
- Annotation_Rule_Engine
AMELIA TO FILL IN
AmiGO
- See AmiGO_1_9
- See Full_Text_Indexing_Progress
Website
AMELIA - ANYTHING HERE?
Workflow Support
- Created a basic GO_Galaxy_Environment
- integrated map2slim
- integrated slim-creator
- integrated enrichment tools
- GO TermFinder
- Ontologizer
MOOSE libraries
AMELIA TO FILL IN
Reference Genome Support
RefG in AmiGO
SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages
- js phylo views: work in progress on dev machine (nothing public yet). See: AmiGO_Phylotrees.
- existing refg pages: to be dropped--no further work
- AmiGO_and_QuickGO_Integration SETH/TONY
MARY TO FILL IN
Paint
SUZI TO FILL IN
Ontology Support
TermGenie
See Compositional_Term_Submission_Tool
- Created initial prototype, in use by ontology group and annotators
OBO-Edit
See
AMINA TO FILL IN
Transition to OWL
- Initiated plan for ontology support in next cycle Software_Group_2010_Future_Plans#Plan
- first draft of obof1.4 guide http://www.geneontology.org/GO.format.obo-1_4.shtml
- formal spec of obo syntax and owl mapping: http://berkeleybop.org/~cjm/obo2owl/obo-syntax.html
- rewritten parser and obo2owl converter, 100% java http://code.google.com/p/oboformat/