Software Group progress report for 2010: Difference between revisions

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=== RefG in AmiGO ===
=== RefG in AmiGO ===


SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages
 
* Loading Trees
** Matching IDs
*** Currently ~64% of of the ids are being matched after the new QFO load.
*** Noticed that 1970 proteins are in more then one group (ie YEAST|SGD:S000006392|UniProtKB:Q06580). Informed Paul Thomas.
** Report Pages
*** 2. Date selected for concurrent annotation: Have data, obtaining write access to GO cvs
*** 8. 'Date comprehensively annotated' for groups that can provide this information: Have no idea where this data is
 


* js phylo views: work in progress on dev machine (nothing public yet). See: [[AmiGO_Phylotrees]].
* js phylo views: work in progress on dev machine (nothing public yet). See: [[AmiGO_Phylotrees]].

Revision as of 12:21, 18 November 2010

Management

Annotation Support

Database

Production

BEN TO FILL IN

Schema Overhaul

Schema Overhaul

SHAHID TO FILL IN

(this may belong in a separate report - add here for now anyway)

Annotation QC

 AMELIA TO FILL IN

AmiGO

Website

AMELIA - ANYTHING HERE?

Workflow Support

  • Created a basic GO_Galaxy_Environment
    • integrated map2slim
    • integrated slim-creator
    • integrated enrichment tools
      • GO TermFinder
      • Ontologizer

MOOSE libraries

AMELIA TO FILL IN

Reference Genome Support

RefG in AmiGO

  • Loading Trees
    • Matching IDs
      • Currently ~64% of of the ids are being matched after the new QFO load.
      • Noticed that 1970 proteins are in more then one group (ie YEAST|SGD:S000006392|UniProtKB:Q06580). Informed Paul Thomas.
    • Report Pages
      • 2. Date selected for concurrent annotation: Have data, obtaining write access to GO cvs
      • 8. 'Date comprehensively annotated' for groups that can provide this information: Have no idea where this data is


MARY TO FILL IN

Paint

SUZI TO FILL IN

Ontology Support

TermGenie

See Compositional_Term_Submission_Tool

  • Created initial prototype, in use by ontology group and annotators

OBO-Edit

See

AMINA TO FILL IN

Transition to OWL

See Transition_to_OWL