Software Group progress report for 2010

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Revision as of 15:51, 16 November 2010 by Sjcarbon (talk | contribs) (→‎AmiGO)
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Management

Annotation Support

Database

Production

BEN TO FILL IN

Schema Overhaul

Schema Overhaul

SHAHID TO FILL IN

(this may belong in a separate report - add here for now anyway)

Annotation QC

 AMELIA TO FILL IN

AmiGO

Website

AMELIA - ANYTHING HERE?

Workflow Support

  • Created a basic GO_Galaxy_Environment
    • integrated map2slim
    • integrated slim-creator
    • integrated enrichment tools
      • GO TermFinder
      • Ontologizer

MOOSE libraries

AMELIA TO FILL IN

Reference Genome Support

RefG in AmiGO

SVEN TO FILL IN - loading trees, gene info, integrated amigo report pages

SETH TO FILL IN - js phylo views, existing refg pages AmiGO_Phylotrees AmiGO_and_QuickGO_Integration SETH/TONY

MARY TO FILL IN

Paint

SUZI TO FILL IN

Ontology Support

TermGenie

See Compositional_Term_Submission_Tool

  • Created initial prototype, in use by ontology group and annotators

OBO-Edit

See

AMINA TO FILL IN

Transition to OWL

See Transition_to_OWL